Hymenoptera Genome Database: new genomes and annotation datasets for improved go enrichment and orthologue analyses

The genomic basis of evolutionary differentiation among honey bees

(2021) Bertrand Fouks et al.   GENOME RESEARCH

Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera

(2020) Jan Philip Oeyen et al.   Genome Biology and Evolution

Developmental plasticity shapes social traits and selection in a facultatively eusocial bee

(2020) Karen M. Kapheim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Chromosome-Scale Assembly of the Asian Honeybee Apis cerana Genome

(2020) Zi-Long Wang et al.   Frontiers in Genetics

Genome elimination mediated by gene expression from a selfish chromosome

(2020) Elena Dalla Benetta et al.   Science Advances

De Novo Genome Assemblies for Three North American Bumble Bee Species: Bombus bifarius, Bombus vancouverensis, and Bombus vosnesenskii

(2020) Sam D. Heraghty et al.   G3-Genes Genomes Genetics

Database resources of the National Center for Biotechnology Information

(2020) Eric W Sayers et al.   NUCLEIC ACIDS RESEARCH

SMART: recent updates, new developments and status in 2020

(2020) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

The BioGRID database: A comprehensive biomedical resource of curated protein, genetic and chemical interactions

(2020) Rose Oughtred et al.   PROTEIN SCIENCE

PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API

(2020) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

The Gene Ontology resource: enriching a GOld mine

(2020) et al.   NUCLEIC ACIDS RESEARCH

UniProt: the universal protein knowledgebase in 2021

(2020) et al.   NUCLEIC ACIDS RESEARCH

OrthoDB in 2020: evolutionary and functional annotations of orthologs

(2020) Evgeny M Zdobnov et al.   NUCLEIC ACIDS RESEARCH

FlyBase: updates to the Drosophila melanogaster knowledge base

(2020) Aoife Larkin et al.   NUCLEIC ACIDS RESEARCH

High-quality chromosome-level genome assembly and full-length transcriptome analysis of the pharaoh ant Monomorium pharaonis

(2020) Qionghua Gao et al.   GigaScience

Draft Genome Assembly and Population Genetics of an Agricultural Pollinator, the Solitary Alkali Bee (Halictidae: Nomia melanderi)

(2019) Karen M. Kapheim et al.   G3-Genes Genomes Genetics

Genomic insights into neonicotinoid sensitivity in the solitary bee Osmia bicornis

(2019) Katherine Beadle et al.   PLoS Genetics

Apollo: Democratizing genome annotation

(2019) Nathan A. Dunn et al.   PLoS Computational Biology

InterMineR: an R package for InterMine databases

(2019) Konstantinos A Kyritsis et al.   BIOINFORMATICS

The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host

(2019) Kishor Dhaygude et al.   BMC GENOMICS

A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

(2019) Andreas Wallberg et al.   BMC GENOMICS

Genome of the Parasitoid Wasp Diachasma alloeum, an Emerging Model for Ecological Speciation and Transitions to Asexual Reproduction

(2019) Eric S Tvedte et al.   Genome Biology and Evolution

Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases

(2019) Anurag Priyam et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative genomics of the miniature wasp and pest control agent Trichogramma pretiosum

(2018) Amelia R. I. Lindsey et al.   BMC BIOLOGY

Genetic Basis of Body Color and Spotting Pattern in Redheaded Pine Sawfly Larvae (Neodiprion lecontei)

(2018) Catherine R. Linnen et al.   GENETICS

Rapid Low-Cost Assembly of the Drosophila melanogaster Reference Genome Using Low-Coverage, Long-Read Sequencing

(2018) Edwin A. Solares et al.   G3-Genes Genomes Genetics

Genome Report: Whole Genome Sequence of the Parasitoid Wasp Microplitis demolitor That Harbors an Endogenous Virus Mutualist

(2018) Gaelen R. Burke et al.   G3-Genes Genomes Genetics

Genetic Basis of Body Color and Spotting Pattern in Redheaded Pine Sawfly Larvae (Neodiprion lecontei)

(2018) Catherine R. Linnen et al.   GENETICS

Whole Genome Sequencing of the Braconid Parasitoid Wasp Fopius arisanus , an Important Biocontrol Agent of Pest Tepritid Fruit Flies

(2017) Scott M. Geib et al.   G3-Genes Genomes Genetics

The Genome and Methylome of a Subsocial Small Carpenter Bee,Ceratina calcarata

(2016) Sandra M. Rehan et al.   Genome Biology and Evolution

Genome, transcriptome and methylome sequencing of a primitively eusocial wasp reveal a greatly reduced DNA methylation system in a social insect

(2016) Daniel S. Standage et al.   MOLECULAR ECOLOGY

Comparative genomics reveals convergent rates of evolution in ant–plant mutualisms

(2016) Benjamin E. R. Rubin et al.   Nature Communications

Reciprocal genomic evolution in the ant–fungus agricultural symbiosis

(2016) Sanne Nygaard et al.   Nature Communications

How Do Genomes Create Novel Phenotypes? Insights from the Loss of the Worker Caste in Ant Social Parasites

(2015) Chris R. Smith et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine

(2015) Christine G. Elsik et al.   NUCLEIC ACIDS RESEARCH

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies

(2015) Solenn Patalano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic signatures of evolutionary transitions from solitary to group living

(2015) K. M. Kapheim et al.   SCIENCE

The genomes of two key bumblebee species with primitive eusocial organization

(2015) Ben M Sadd et al.   GENOME BIOLOGY

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

The Genome of the Clonal Raider Ant Cerapachys biroi

(2014) Peter R. Oxley et al.   CURRENT BIOLOGY

The GOA database: Gene Ontology annotation updates for 2015

(2014) Rachael P. Huntley et al.   NUCLEIC ACIDS RESEARCH

InterMine: extensive web services for modern biology

(2014) Alex Kalderimis et al.   NUCLEIC ACIDS RESEARCH

Transposable element islands facilitate adaptation to novel environments in an invasive species

(2014) Lukas Schrader et al.   Nature Communications

Understanding how and why the Gene Ontology and its annotations evolve: the GO within UniProt

(2014) Rachael P Huntley et al.   GigaScience

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

(2013) Sandra Orchard et al.   NUCLEIC ACIDS RESEARCH

The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes

(2013) Sarah D Kocher et al.   GENOME BIOLOGY

Obligate mutualism within a host drives the extreme specialization of a fig wasp genome

(2013) Jin-Hua Xiao et al.   GENOME BIOLOGY

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data

(2012) Richard N. Smith et al.   BIOINFORMATICS

The genome of the leaf-cutting antAcromyrmex echinatiorsuggests key adaptations to advanced social life and fungus farming

(2011) Sanne Nygaard et al.   GENOME RESEARCH

Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile)

(2011) C. D. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The genome of the fire ant Solenopsis invicta

(2011) Y. Wurm et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Draft genome of the red harvester ant Pogonomyrmex barbatus

(2011) C. R. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genome Sequence of the Leaf-Cutter Ant Atta cephalotes Reveals Insights into Its Obligate Symbiotic Lifestyle

(2011) Garret Suen et al.   PLoS Genetics

Genomic Comparison of the Ants Camponotus floridanus and Harpegnathos saltator

(2010) R. Bonasio et al.   SCIENCE

Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species

(2010) J. H. Werren et al.   SCIENCE