InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data

YeastMine—an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit

(2012) Rama Balakrishnan et al.   Database-The Journal of Biological Databases and Curation

MitoMiner: a data warehouse for mitochondrial proteomics data

(2011) A. C. Smith et al.   NUCLEIC ACIDS RESEARCH

modMine: flexible access to modENCODE data

(2011) S. Contrino et al.   NUCLEIC ACIDS RESEARCH

TargetMine, an Integrated Data Warehouse for Candidate Gene Prioritisation and Target Discovery

(2011) Yi-An Chen et al.   PLoS One

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Unlocking the secrets of the genome

(2009) Susan E. Celniker et al.   NATURE

FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database

(2009) Ulrike Pfreundt et al.   NUCLEIC ACIDS RESEARCH