Long reads and Hi‐C sequencing illuminate the two‐compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis
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Title
Long reads and Hi‐C sequencing illuminate the two‐compartment genome of the model arbuscular mycorrhizal symbiont
Rhizophagus irregularis
Authors
Keywords
-
Journal
NEW PHYTOLOGIST
Volume 233, Issue 3, Pages 1097-1107
Publisher
Wiley
Online
2021-11-07
DOI
10.1111/nph.17842
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Note: Only part of the references are listed.- The genome of Geosiphon pyriformis reveals ancestral traits linked to the emergence of the arbuscular mycorrhizal symbiosis
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- Homo- and Dikaryons of the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis Differ in Life History Strategy
- (2021) Edward Umberto Serghi et al. Frontiers in Plant Science
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- (2020) Joachim Wolff et al. NUCLEIC ACIDS RESEARCH
- RepeatModeler2 for automated genomic discovery of transposable element families
- (2020) Jullien M. Flynn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Nuclear Dynamics in the Arbuscular Mycorrhizal Fungi
- (2020) Vasilis Kokkoris et al. TRENDS IN PLANT SCIENCE
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- (2020) Didier Reinhardt et al. TRENDS IN PLANT SCIENCE
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- (2020) David E. Torres et al. Fungal Biology Reviews
- Comparative genomics of Rhizophagus irregularis , R. cerebriforme , R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina
- (2019) Emmanuelle Morin et al. NEW PHYTOLOGIST
- Principles of genome folding into topologically associating domains
- (2019) Quentin Szabo et al. Science Advances
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- (2019) Martin Falk et al. NATURE
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- (2018) Malte Spielmann et al. NATURE REVIEWS GENETICS
- Arbuscular mycorrhizal fungi: intraspecific diversity and pangenomes
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- (2018) Eric C. H. Chen et al. NEW PHYTOLOGIST
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- (2018) Fidel Ramírez et al. Nature Communications
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- (2018) Guillaume Marçais et al. PLoS Computational Biology
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- (2018) Michael J. Roach et al. BMC BIOINFORMATICS
- The need for speed: compartmentalized genome evolution in filamentous phytopathogens
- (2018) Lamprinos Frantzeskakis et al. MOLECULAR PLANT PATHOLOGY
- The Pfam protein families database in 2019
- (2018) Sara El-Gebali et al. NUCLEIC ACIDS RESEARCH
- Contemporaneous radiations of fungi and plants linked to symbiosis
- (2018) François Lutzoni et al. Nature Communications
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- (2018) David J. Winter et al. PLoS Genetics
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- (2018) Eric CH Chen et al. eLife
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- (2018) Amanda J Lea et al. eLife
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- (2017) Robert Vaser et al. GENOME RESEARCH
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- (2017) Sergey Koren et al. GENOME RESEARCH
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- (2017) Romain Savary et al. ISME Journal
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- (2017) Francis M. Martin et al. SCIENCE
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- (2017) Nicolas Corradi et al. TRENDS IN PLANT SCIENCE
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- (2017) Seungsoo Kim et al. eLife
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- (2017) Laurent Kamel et al. Frontiers in Plant Science
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- The Arbuscular Mycorrhizal Symbiosis: Origin and Evolution of a Beneficial Plant Infection
- (2012) Nicolas Corradi et al. PLoS Pathogens
- A Secreted Fungal Effector of Glomus intraradices Promotes Symbiotic Biotrophy
- (2011) Silke Kloppholz et al. CURRENT BIOLOGY
- SignalP 4.0: discriminating signal peptides from transmembrane regions
- (2011) Thomas Nordahl Petersen et al. NATURE METHODS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Plants, Mycorrhizal Fungi, and Bacteria: A Network of Interactions
- (2009) Paola Bonfante et al. Annual Review of Microbiology
- ‘Glomus intraradicesDAOM197198’, a model fungus in arbuscular mycorrhiza research, is notGlomus intraradices
- (2009) Herbert Stockinger et al. NEW PHYTOLOGIST
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