Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei
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Title
Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei
Authors
Keywords
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Journal
Scientific Reports
Volume 10, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-01-28
DOI
10.1038/s41598-020-58025-3
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- (2016) NUCLEIC ACIDS RESEARCH
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- (2016) Kenneth J. Locey et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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