Gut Microbiota Dysbiosis as Risk and Premorbid Factors of IBD and IBS Along the Childhood–Adulthood Transition

Rectal bacteriotherapy for recurrent Clostridium difficile-associated diarrhoea: results from a case series of 55 patients in Denmark 2000–2012

(2015) M. Tvede et al.   CLINICAL MICROBIOLOGY AND INFECTION

Understanding probiotics’ role in allergic children

(2015) Pamela Vernocchi et al.   Current Opinion in Allergy and Clinical Immunology

Findings From a Randomized Controlled Trial of Fecal Transplantation for Patients With Ulcerative Colitis

(2015) Noortje G. Rossen et al.   GASTROENTEROLOGY

Role of FODMAPs in Patients With Irritable Bowel Syndrome

(2015) Pasquale Mansueto et al.   NUTRITION IN CLINICAL PRACTICE

Pathogens’ Exploitation of the Intestinal Food Web

(2014) Tu Anh Pham N. et al.   Cell Host & Microbe

The Microbiome in Inflammatory Bowel Disease: Current Status and the Future Ahead

(2014) Aleksandar D. Kostic et al.   GASTROENTEROLOGY

Manipulation of the Microbiota for Treatment of IBS and IBD—Challenges and Controversies

(2014) Fergus Shanahan et al.   GASTROENTEROLOGY

Bacterial protein signals are associated with Crohn’s disease

(2014) Catherine Juste et al.   GUT

Finding the Missing Links among Metabolites, Microbes, and the Host

(2014) Pieter C. Dorrestein et al.   IMMUNITY

The role of diet on intestinal microbiota metabolism: downstream impacts on host immune function and health, and therapeutic implications

(2014) Jason R. Goldsmith et al.   JOURNAL OF GASTROENTEROLOGY

Crosstalk at the mucosal border: importance of the gut microenvironment in IBS

(2014) Lena Öhman et al.   Nature Reviews Gastroenterology & Hepatology

On the fiftieth anniversaryPostinfectious irritable bowel syndrome: mechanisms related to pathogens

(2014) M. Grover et al.   NEUROGASTROENTEROLOGY AND MOTILITY

Next Generation Sequencing and the Future of Genetic Diagnosis

(2014) Katja Lohmann et al.   Neurotherapeutics

The human gut microbiota: a dynamic interplay with the host from birth to senescence settled during childhood

(2014) Lorenza Putignani et al.   PEDIATRIC RESEARCH

Molecular basis of the irritable bowel syndrome

(2014) Anna Vaiopoulou   WORLD JOURNAL OF GASTROENTEROLOGY

Complex host genetics influence the microbiome in inflammatory bowel disease

(2014) Dan Knights et al.   Genome Medicine

A Physicians' Wish List for the Clinical Application of Intestinal Metagenomics

(2014) Ingeborg Klymiuk et al.   PLOS MEDICINE

Systematic review with meta-analysis: non-alcoholic steatohepatitis - a case for personalised treatment based on pathogenic targets

(2013) Z. M. Younossi et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Intestinal microbiota, diet and health

(2013) Susan E. Power et al.   BRITISH JOURNAL OF NUTRITION

Intraluminal Containment of Commensal Outgrowth in the Gut during Infection-Induced Dysbiosis

(2013) Michael J. Molloy et al.   Cell Host & Microbe

Faecalibacterium prausnitzii and human intestinal health

(2013) S Miquel et al.   CURRENT OPINION IN MICROBIOLOGY

Metagenome and metabolism: the tissue microbiota hypothesis

(2013) Rémy Burcelin et al.   DIABETES OBESITY & METABOLISM

Downregulation of microRNA-107 in intestinal CD11c+myeloid cells in response to microbiota and proinflammatory cytokines increases IL-23p19 expression

(2013) Xiaochang Xue et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Beyond Gene Discovery in Inflammatory Bowel Disease: The Emerging Role of Epigenetics

(2013) Nicholas T. Ventham et al.   GASTROENTEROLOGY

Western diet induces dysbiosis with increasedE coliin CEABAC10 mice,alters host barrier function favouring AIEC colonisation

(2013) Margarita Martinez-Medina et al.   GUT

Influence of host immunoregulatory genes, ER stress and gut microbiota on the shared pathogenesis of inflammatory bowel disease and Type 1 diabetes

(2013) Altin Gjymishka et al.   Immunotherapy

Waiting for the human intestinal Eukaryotome

(2013) Lee O'Brien Andersen et al.   ISME Journal

Proteomics and metabolomics in inflammatory bowel disease

(2013) Yunki Yau et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

Toll-like receptors in alcoholic liver disease, non-alcoholic steatohepatitis and carcinogenesis

(2013) Yoon Seok Roh et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

Pathological bacterial translocation in liver cirrhosis

(2013) Reiner Wiest et al.   JOURNAL OF HEPATOLOGY

A metaproteomic pipeline to identify newborn mouse gut phylotypes

(2013) Federica Del Chierico et al.   Journal of Proteomics

Richness of human gut microbiome correlates with metabolic markers

(2013) Emmanuelle Le Chatelier et al.   NATURE

Dietary intervention impact on gut microbial gene richness

(2013) Aurélie Cotillard et al.   NATURE

Control of pathogens and pathobionts by the gut microbiota

(2013) Nobuhiko Kamada et al.   NATURE IMMUNOLOGY

Reduced E-cadherin expression is associated with abdominal pain and symptom duration in a study of alternating and diarrhea predominant IBS

(2013) E. Wilcz-Villega et al.   NEUROGASTROENTEROLOGY AND MOTILITY

Lipidomic and Spatio-Temporal Imaging of Fat by Mass Spectrometry in Mice Duodenum during Lipid Digestion

(2013) Alexandre Seyer et al.   PLoS One

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Active ulcerative colitis associated with low prevalence ofBlastocystisandDientamoeba fragilisinfection

(2013) Andreas Munk Petersen et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY

Blastocystis: getting to grips with our guileful guest

(2013) Pauline D. Scanlan et al.   TRENDS IN PARASITOLOGY

Probiotics, Prebiotics and Immunomodulation of Gut Mucosal Defences: Homeostasis and Immunopathology

(2013) Holly Hardy et al.   Nutrients

Functional profiling of the gut microbiome in disease-associated inflammation

(2013) Daniela Börnigen et al.   Genome Medicine

Sample size planning for classification models

(2012) Claudia Beleites et al.   ANALYTICA CHIMICA ACTA

Barrier dysfunction and bacterial uptake in the follicle-associated epithelium of ileal Crohn's disease

(2012) Åsa V. Keita et al.   Annals of the New York Academy of Sciences

Predicting sample size required for classification performance

(2012) Rosa L Figueroa et al.   BMC Medical Informatics and Decision Making

Influence of a high-fat diet on gut microbiota, intestinal permeability and metabolic endotoxaemia

(2012) Ana Paula Boroni Moreira et al.   BRITISH JOURNAL OF NUTRITION

Gut Microbiota Composition and Activity in Relation to Host Metabolic Phenotype and Disease Risk

(2012) Elaine Holmes et al.   Cell Metabolism

Regulation of intestinal epithelial permeability by tight junctions

(2012) Takuya Suzuki   CELLULAR AND MOLECULAR LIFE SCIENCES

Intestinal Domination and the Risk of Bacteremia in Patients Undergoing Allogeneic Hematopoietic Stem Cell Transplantation

(2012) Ying Taur et al.   CLINICAL INFECTIOUS DISEASES

Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization

(2012) I. Sharon et al.   GENOME RESEARCH

Intestinal microbiota in functional bowel disorders: a Rome foundation report

(2012) Magnus Simrén et al.   GUT

Diarrhoea-predominant irritable bowel syndrome: an organic disorder with structural abnormalities in the jejunal epithelial barrier

(2012) Cristina Martínez et al.   GUT

Multiplex Targeted Proteomic Assay for Biomarker Detection in Plasma: A Pancreatic Cancer Biomarker Case Study

(2012) Sheng Pan et al.   JOURNAL OF PROTEOME RESEARCH

Early-life gut microbiota under physiological and pathological conditions: The central role of combined meta-omics-based approaches

(2012) Federica Del Chierico et al.   Journal of Proteomics

Global and regional mortality from 235 causes of death for 20 age groups in 1990 and 2010: a systematic analysis for the Global Burden of Disease Study 2010

(2012) Rafael Lozano et al.   LANCET

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Host–microbe interactions have shaped the genetic architecture of inflammatory bowel disease

(2012) Luke Jostins et al.   NATURE

Lethal inflammasome activation by a multidrug-resistant pathobiont upon antibiotic disruption of the microbiota

(2012) Janelle S Ayres et al.   NATURE MEDICINE

The gut microbiota in IBD

(2012) Chaysavanh Manichanh et al.   Nature Reviews Gastroenterology & Hepatology

Mind-altering microorganisms: the impact of the gut microbiota on brain and behaviour

(2012) John F. Cryan et al.   NATURE REVIEWS NEUROSCIENCE

Interkingdom metabolic transformations captured by microbial imaging mass spectrometry

(2012) W. J. Moree et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Taking Stock of the Human Microbiome and Disease

(2012) M. Balter   SCIENCE

Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota

(2012) J. C. Arthur et al.   SCIENCE

Reproducible Quantification of Cancer-Associated Proteins in Body Fluids Using Targeted Proteomics

(2012) R. Huttenhain et al.   Science Translational Medicine

Human Gut Microbiota: Repertoire and Variations

(2012) Jean-Christophe Lagier et al.   Frontiers in Cellular and Infection Microbiology

Differential Targeting of the E-Cadherin/β-Catenin Complex by Gram-Positive Probiotic Lactobacilli Improves Epithelial Barrier Function

(2011) Stephanie Hummel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease

(2011) Alan W Walker et al.   BMC MICROBIOLOGY

Eating For Two: How Metabolism Establishes Interspecies Interactions in the Gut

(2011) Michael A. Fischbach et al.   Cell Host & Microbe

Hygiene Hypothesis and Autoimmune Diseases

(2011) Graham A. W. Rook   CLINICAL REVIEWS IN ALLERGY & IMMUNOLOGY

Twin Study Indicates Loss of Interaction Between Microbiota and Mucosa of Patients With Ulcerative Colitis

(2011) Patricia Lepage et al.   GASTROENTEROLOGY

Epithelial barrier: an interface for the cross-communication between gut flora and immune system

(2011) Yoshiyuki Goto et al.   IMMUNOLOGICAL REVIEWS

MicroRNAs in inflammatory bowel disease

(2011) Joel R. Pekow et al.   INFLAMMATORY BOWEL DISEASES

Human nutrition, the gut microbiome and the immune system

(2011) Andrew L. Kau et al.   NATURE

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Microbiota Modulate Host Gene Expression via MicroRNAs

(2011) Guillaume Dalmasso et al.   PLoS One

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Environmental influences on T regulatory cells in inflammatory bowel disease

(2011) Gijs Hardenberg et al.   SEMINARS IN IMMUNOLOGY

Gut microbiome-host interactions in health and disease

(2011) James M Kinross et al.   Genome Medicine

Microbial Eukaryotes in the Human Microbiome: Ecology, Evolution, and Future Directions

(2011) Laura Wegener Parfrey et al.   Frontiers in Microbiology

Brain?Gut?Microbe Communication in Health and Disease

(2011) Sue Grenham et al.   Frontiers in Physiology

Cytoskeletal Regulation of Epithelial Barrier Function During Inflammation

(2010) Andrei I. Ivanov et al.   AMERICAN JOURNAL OF PATHOLOGY

The Human Gut Microbiome: Ecology and Recent Evolutionary Changes

(2010) Jens Walter et al.   Annual Review of Microbiology

Sample size and statistical power considerations in high-dimensionality data settings: a comparative study of classification algorithms

(2010) Yu Guo et al.   BMC BIOINFORMATICS

Gut Microbiota, Lipopolysaccharides, and Innate Immunity in the Pathogenesis of Obesity and Cardiovascular Risk

(2010) Melania Manco et al.   ENDOCRINE REVIEWS

Dysbiosis of fecal microbiota in Crohnʼs disease patients as revealed by a custom phylogenetic microarray

(2010) Seungha Kang et al.   INFLAMMATORY BOWEL DISEASES

Dominant and diet-responsive groups of bacteria within the human colonic microbiota

(2010) Alan W Walker et al.   ISME Journal

Gut inflammation provides a respiratory electron acceptor for Salmonella

(2010) Sebastian E. Winter et al.   NATURE

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci

(2010) Andre Franke et al.   NATURE GENETICS

GERD and insomnia—first degree relatives or distant cousins?

(2010) Ellen Stein et al.   Nature Reviews Gastroenterology & Hepatology

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

(2010) C. De Filippo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reversible Microbial Colonization of Germ-Free Mice Reveals the Dynamics of IgA Immune Responses

(2010) S. Hapfelmeier et al.   SCIENCE

Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species

(2010) K. Atarashi et al.   SCIENCE

A review of the efficacy of traditional Iranian medicine for inflammatory bowel disease

(2010) Roja Rahimi   WORLD JOURNAL OF GASTROENTEROLOGY

Establishment of the gut microbiota in Western infants

(2009) I Adlerberth et al.   ACTA PAEDIATRICA

Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria

(2009) Ivaylo I. Ivanov et al.   CELL

Lipocalin-2 Resistance Confers an Advantage to Salmonella enterica Serotype Typhimurium for Growth and Survival in the Inflamed Intestine

(2009) Manuela Raffatellu et al.   Cell Host & Microbe

EspM inhibits pedestal formation by enterohaemorrhagicEscherichia coliand enteropathogenicE. coliand disrupts the architecture of a polarized epithelial monolayer

(2009) Michal Simovitch et al.   CELLULAR MICROBIOLOGY

Better living through microbial action: the benefits of the mammalian gastrointestinal microbiota on the host

(2009) Thomas D. Leser et al.   ENVIRONMENTAL MICROBIOLOGY

Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43

(2009) Kendle M. Maslowski et al.   NATURE

Translating metabolic exchange with imaging mass spectrometry

(2009) Yu-Liang Yang et al.   Nature Chemical Biology

Inflammatory Bowel Disease

(2009) Clara Abraham et al.   NEW ENGLAND JOURNAL OF MEDICINE

Role of Bile Acids and Bile Acid Receptors in Metabolic Regulation

(2009) Philippe Lefebvre et al.   PHYSIOLOGICAL REVIEWS

Bacterial Community Variation in Human Body Habitats Across Space and Time

(2009) E. K. Costello et al.   SCIENCE

Shared Principles in NF-κB Signaling

(2008) Matthew S. Hayden et al.   CELL

Epidemiology of inflammatory bowel disease in a German twin cohort: Results of a nationwide study

(2008) Martina E. Spehlmann et al.   INFLAMMATORY BOWEL DISEASES

Pouchitis, Similar to Active Ulcerative Colitis, Is Associated with Impaired Butyrate Oxidation by Intestinal Mucosa

(2008) Vicky De Preter et al.   INFLAMMATORY BOWEL DISEASES

Microbiology: The inside story

(2008) Asher Mullard   NATURE

Lymphoid tissue genesis induced by commensals through NOD1 regulates intestinal homeostasis

(2008) Djahida Bouskra et al.   NATURE