A repackaged CRISPR platform increases homology-directed repair for yeast engineering

Stress-tolerant non-conventional microbes enable next-generation chemical biosynthesis

(2020) Sarah Thorwall et al.   Nature Chemical Biology

Imaging of DNA and RNA in Living Eukaryotic Cells to Reveal Spatiotemporal Dynamics of Gene Expression

(2020) Hanae Sato et al.   Annual Review of Biochemistry

Contribution of Complex I NADH dehydrogenase to respiratory energy coupling in glucose-grown cultures of Ogataea parapolymorpha

(2020) Hannes Juergens et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Leveraging the Hermes transposon to accelerate the development of nonconventional yeast-based microbial cell factories

(2020) Yuxin Zhao et al.   ACS Synthetic Biology

metaFlye: scalable long-read metagenome assembly using repeat graphs

(2020) Mikhail Kolmogorov et al.   NATURE METHODS

CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing

(2019) Kornel Labun et al.   NUCLEIC ACIDS RESEARCH

The Chromatin Structure of CRISPR-Cas9 Target DNA Controls the Balance between Mutagenic and Homology-Directed Gene-Editing Events

(2019) Josephine M. Janssen et al.   Molecular Therapy-Nucleic Acids

Advances in Using Hansenula polymorpha as Chassis for Recombinant Protein Production

(2019) João Heitor Colombelli Manfrão-Netto et al.   Frontiers in Bioengineering and Biotechnology

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

NanoPack: visualizing and processing long-read sequencing data

(2018) Wouter De Coster et al.   BIOINFORMATICS

CRISPR-mediated Genome Editing and Gene Repression in Scheffersomyces stipitis

(2018) Mingfeng Cao et al.   Biotechnology Journal

CRISPR-mediated Genome Editing and Gene Repression in Scheffersomyces stipitis

(2018) Mingfeng Cao et al.   Biotechnology Journal

Efficient genome editing by CRISPR/Cas9 with a tRNA-sgRNA fusion in the methylotrophic yeast Ogataea polymorpha

(2017) Minori Numamoto et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Nextflow enables reproducible computational workflows

(2017) Paolo Di Tommaso et al.   NATURE BIOTECHNOLOGY

Rapid Isolation of Centromeres from Scheffersomyces stipitis

(2017) Mingfeng Cao et al.   ACS Synthetic Biology

Centromeric DNA Facilitates Nonconventional Yeast Genetic Engineering

(2017) Mingfeng Cao et al.   ACS Synthetic Biology

The Role of the Core Non-Homologous End Joining Factors in Carcinogenesis and Cancer

(2017) et al.   Cancers

Multiplex gene editing of the Yarrowia lipolytica genome using the CRISPR-Cas9 system

(2016) Shuliang Gao et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Synthetic RNA Polymerase III Promoters Facilitate High-Efficiency CRISPR–Cas9-Mediated Genome Editing in Yarrowia lipolytica

(2016) Cory M. Schwartz et al.   ACS Synthetic Biology

Innovating a Nonconventional Yeast Platform for Producing Shikimate as the Building Block of High-Value Aromatics

(2016) Meirong Gao et al.   ACS Synthetic Biology

Post-translational Regulation of Cas9 during G1 Enhances Homology-Directed Repair

(2016) Tony Gutschner et al.   Cell Reports

One-Cell Doubling Evaluation by Living Arrays of Yeast, ODELAY!

(2016) Thurston Herricks et al.   G3-Genes Genomes Genetics

Genomics and the making of yeast biodiversity

(2015) Chris Todd Hittinger et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

An enzyme-coupled biosensor enables (S)-reticuline production in yeast from glucose

(2015) William C DeLoache et al.   Nature Chemical Biology

Yarrowia lipolyticaand Its Multiple Applications in the Biotechnological Industry

(2014) F. A. G. Gonçalves et al.   TheScientificWorldJOURNAL

Enhanced homology-directed human genome engineering by controlled timing of CRISPR/Cas9 delivery

(2014) Steven Lin et al.   eLife

One-Step Generation of Mice Carrying Reporter and Conditional Alleles by CRISPR/Cas-Mediated Genome Engineering

(2013) Hui Yang et al.   CELL

Benzylisoquinoline Alkaloid Metabolism: A Century of Discovery and a Brave New World

(2013) Jillian M. Hagel et al.   PLANT AND CELL PHYSIOLOGY

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

(2012) Christine Vogel et al.   NATURE REVIEWS GENETICS

DNA repair by nonhomologous end joining and homologous recombination during cell cycle in human cells

(2011) Zhiyong Mao et al.   CELL CYCLE

Cytochrome P450: taming a wild type enzyme

(2011) Sang Taek Jung et al.   CURRENT OPINION IN BIOTECHNOLOGY

New tools for the genetic manipulation of filamentous fungi

(2010) Ulrich Kück et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The End of the Circle for Yeast Mitochondrial DNA

(2010) Arnold J. Bendich   MOLECULAR CELL

The yeast Kluyveromyces marxianus and its biotechnological potential

(2008) Gustavo Graciano Fonseca et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Optimization of yeast cell cycle analysis and morphological characterization by multispectral imaging flow cytometry

(2008) Meredith E. K. Calvert et al.   CYTOMETRY PART A

Comparison of nonhomologous end joining and homologous recombination in human cells

(2008) Z MAO et al.   DNA REPAIR

DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways

(2008) Zengyi Shao et al.   NUCLEIC ACIDS RESEARCH