TReMAP: Automatic 3D Neuron Reconstruction Based on Tracing, Reverse Mapping and Assembling of 2D Projections

From DIADEM to BigNeuron

(2015) Hanchuan Peng et al.   NEUROINFORMATICS

Rapid Reconstruction of 3D Neuronal Morphology from Light Microscopy Images with Augmented Rayburst Sampling

(2014) Xing Ming et al.   PLoS One

APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree

(2013) Hang Xiao et al.   BIOINFORMATICS

Automated image computing reshapes computational neuroscience

(2013) Hanchuan Peng et al.   BMC BIOINFORMATICS

New insights into the classification and nomenclature of cortical GABAergic interneurons

(2013) Javier DeFelipe et al.   NATURE REVIEWS NEUROSCIENCE

3D BrainCV: Simultaneous visualization and analysis of cells and capillaries in a whole mouse brain with one-micron voxel resolution

(2013) Jingpeng Wu et al.   NEUROIMAGE

Cozzarelli Prize Winner: Eight pairs of descending visual neurons in the dragonfly give wing motor centers accurate population vector of prey direction

(2012) P. T. Gonzalez-Bellido et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Neuromantic – from Semi-Manual to Semi-Automatic Reconstruction of Neuron Morphology

(2012) Darren R. Myatt et al.   Frontiers in Neuroinformatics

Automatic 3D neuron tracing using all-path pruning

(2011) H. Peng et al.   BIOINFORMATICS

Morphologically Distinct Classes of Relay Cells Exhibit Regional Preferences in the Dorsal Lateral Geniculate Nucleus of the Mouse

(2011) T. E. Krahe et al.   JOURNAL OF NEUROSCIENCE

3-D Image Pre-processing Algorithms for Improved Automated Tracing of Neuronal Arbors

(2011) Arunachalam Narayanaswamy et al.   NEUROINFORMATICS

A Broadly Applicable 3-D Neuron Tracing Method Based on Open-Curve Snake

(2011) Yu Wang et al.   NEUROINFORMATICS

Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model

(2010) H. Peng et al.   BIOINFORMATICS

Semi-Automated Reconstruction of Neural Processes from Large Numbers of Fluorescence Images

(2009) Ju Lu et al.   PLoS One