Extensible visualization and analysis for multidimensional images using Vaa3D

TeraStitcher - A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images

(2013) Alessandro Bria et al.   BMC BIOINFORMATICS

Icy: an open bioimage informatics platform for extended reproducible research

(2012) Fabrice de Chaumont et al.   NATURE METHODS

Biological imaging software tools

(2012) Kevin W Eliceiri et al.   NATURE METHODS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Confocal light sheet microscopy: micron-scale neuroanatomy of the entire mouse brain

(2012) L. Silvestri et al.   OPTICS EXPRESS

Cozzarelli Prize Winner: Eight pairs of descending visual neurons in the dragonfly give wing motor centers accurate population vector of prey direction

(2012) P. T. Gonzalez-Bellido et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Visualization and Analysis of 3D Microscopic Images

(2012) Fuhui Long et al.   PLoS Computational Biology

Automatic 3D neuron tracing using all-path pruning

(2011) H. Peng et al.   BIOINFORMATICS

Computer Vision in Cell Biology

(2011) Gaudenz Danuser   CELL

BrainAligner: 3D registration atlases of Drosophila brains

(2011) Hanchuan Peng et al.   NATURE METHODS

The FARSIGHT Trace Editor: An Open Source Tool for 3-D Inspection and Efficient Pattern Analysis Aided Editing of Automated Neuronal Reconstructions

(2011) Jonathan Luisi et al.   NEUROINFORMATICS

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

(2010) Hanchuan Peng et al.   NATURE BIOTECHNOLOGY

Pattern Recognition Software and Techniques for Biological Image Analysis

(2010) Lior Shamir et al.   PLoS Computational Biology

Bioimage Informatics for Experimental Biology

(2009) Jason R. Swedlow et al.   Annual Review of Biophysics

Bisque: a platform for bioimage analysis and management

(2009) Kristian Kvilekval et al.   BIOINFORMATICS

A 3D digital atlas of C. elegans and its application to single-cell analyses

(2009) Fuhui Long et al.   NATURE METHODS

Bioimage informatics: a new area of engineering biology

(2008) Hanchuan Peng   BIOINFORMATICS

Exploration and visualization of gene expression with neuroanatomy in the adult mouse brain

(2008) Christopher Lau et al.   BMC BIOINFORMATICS

L-Measure: a web-accessible tool for the analysis, comparison and search of digital reconstructions of neuronal morphologies

(2008) Ruggero Scorcioni et al.   Nature Protocols