Morphological diversity of single neurons in molecularly defined cell types

Chemical sectioning fluorescence tomography: high-throughput, high-contrast, multicolor, whole-brain imaging at subcellular resolution

(2021) Xiaojun Wang et al.   Cell Reports

A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

(2021) Zizhen Yao et al.   CELL

A multimodal cell census and atlas of the mammalian primary motor cortex

(2021) et al.   NATURE

Genetic dissection of the glutamatergic neuron system in cerebral cortex

(2021) Katherine S. Matho et al.   NATURE

Spatially resolved cell atlas of the mouse primary motor cortex by MERFISH

(2021) Meng Zhang et al.   NATURE

Epigenomic diversity of cortical projection neurons in the mouse brain

(2021) Zhuzhu Zhang et al.   NATURE

The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas

(2020) Quanxin Wang et al.   CELL

Extraction of Distinct Neuronal Cell Types from within a Genetically Continuous Population

(2020) Euiseok J. Kim et al.   NEURON

Brainwide Genetic Sparse Cell Labeling to Illuminate the Morphology of Neurons and Glia with Cre-Dependent MORF Mice

(2020) Matthew B. Veldman et al.   NEURON

Anatomically segregated basal ganglia pathways allow parallel behavioral modulation

(2020) Jaeeon Lee et al.   NATURE NEUROSCIENCE

Higher-Order Thalamic Circuits Channel Parallel Streams of Visual Information in Mice

(2019) Corbett Bennett et al.   NEURON

Reconstruction of 1,000 Projection Neurons Reveals New Cell Types and Organization of Long-Range Connectivity in the Mouse Brain

(2019) Johan Winnubst et al.   CELL

A repeated molecular architecture across thalamic pathways

(2019) James W. Phillips et al.   NATURE NEUROSCIENCE

High-Throughput Mapping of Long-Range Neuronal Projection Using In Situ Sequencing

(2019) Xiaoyin Chen et al.   CELL

Hierarchical organization of cortical and thalamic connectivity

(2019) Julie A. Harris et al.   NATURE

TeraVR empowers precise reconstruction of complete 3-D neuronal morphology in the whole brain

(2019) Yimin Wang et al.   Nature Communications

A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality

(2018) Tanya L. Daigle et al.   CELL

Nontoxic, double-deletion-mutant rabies viral vectors for retrograde targeting of projection neurons

(2018) Soumya Chatterjee et al.   NATURE NEUROSCIENCE

The Mouse Cortical Connectome, Characterized by an Ultra-Dense Cortical Graph, Maintains Specificity by Distinct Connectivity Profiles

(2018) Răzvan Gămănuţ et al.   NEURON

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain

(2018) Arpiar Saunders et al.   CELL

Molecular Architecture of the Mouse Nervous System

(2018) Amit Zeisel et al.   CELL

Input-output organization of the mouse claustrum

(2018) Brian Zingg et al.   JOURNAL OF COMPARATIVE NEUROLOGY

The logic of single-cell projections from visual cortex

(2018) Yunyun Han et al.   NATURE

Shared and distinct transcriptomic cell types across neocortical areas

(2018) Bosiljka Tasic et al.   NATURE

Distinct descending motor cortex pathways and their roles in movement

(2018) Michael N. Economo et al.   NATURE

Cell-type-specific and projection-specific brain-wide reconstruction of single neurons

(2018) Rui Lin et al.   NATURE METHODS

Maintenance of persistent activity in a frontal thalamocortical loop

(2017) Zengcai V. Guo et al.   NATURE

Neuronal cell-type classification: challenges, opportunities and the path forward

(2017) Hongkui Zeng et al.   NATURE REVIEWS NEUROSCIENCE

Cell Type-Specific Structural Organization of the Six Layers in Rat Barrel Cortex

(2017) Rajeevan T. Narayanan et al.   Frontiers in Neuroanatomy

Diverse Central Projection Patterns of Retinal Ganglion Cells

(2017) Emily M. Martersteck et al.   Cell Reports

Embedding and Chemical Reactivation of Green Fluorescent Protein in the Whole Mouse Brain for Optical Micro-Imaging

(2017) Yadong Gang et al.   Frontiers in Neuroscience

Organization of the connections between claustrum and cortex in the mouse

(2016) Quanxin Wang et al.   JOURNAL OF COMPARATIVE NEUROLOGY

TeraFly: real-time three-dimensional visualization and annotation of terabytes of multidimensional volumetric images

(2016) Alessandro Bria et al.   NATURE METHODS

Thalamus plays a central role in ongoing cortical functioning

(2016) S Murray Sherman   NATURE NEUROSCIENCE

High-Throughput Mapping of Single-Neuron Projections by Sequencing of Barcoded RNA

(2016) Justus M. Kebschull et al.   NEURON

A Designer AAV Variant Permits Efficient Retrograde Access to Projection Neurons

(2016) D. Gowanlock R. Tervo et al.   NEURON

High-throughput dual-colour precision imaging for brain-wide connectome with cytoarchitectonic landmarks at the cellular level

(2016) Hui Gong et al.   Nature Communications

A platform for brain-wide imaging and reconstruction of individual neurons

(2016) Michael N Economo et al.   eLife

Supernova: A Versatile Vector System for Single-Cell Labeling and Gene Function Studies in vivo

(2016) Wenshu Luo et al.   Scientific Reports

The neocortical circuit: themes and variations

(2015) Kenneth D Harris et al.   NATURE NEUROSCIENCE

Transgenic Mice for Intersectional Targeting of Neural Sensors and Effectors with High Specificity and Performance

(2015) Linda Madisen et al.   NEURON

Architecture of the cerebral cortical association connectome underlying cognition

(2015) Mihail Bota et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Neural Networks of the Mouse Neocortex

(2014) Brian Zingg et al.   CELL

A mesoscale connectome of the mouse brain

(2014) Seung Wook Oh et al.   NATURE

Extensible visualization and analysis for multidimensional images using Vaa3D

(2014) Hanchuan Peng et al.   Nature Protocols

Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis

(2014) Hanchuan Peng et al.   Nature Communications

Chemical reactivation of quenched fluorescent protein molecules enables resin-embedded fluorescence microimaging

(2014) Hanqing Xiong et al.   Nature Communications

A genuine layer 4 in motor cortex with prototypical synaptic circuit connectivity

(2014) Naoki Yamawaki et al.   eLife

Membrane Potential Dynamics of Neocortical Projection Neurons Driving Target-Specific Signals

(2013) Takayuki Yamashita et al.   NEURON

Software for Computing and Annotating Genomic Ranges

(2013) Michael Lawrence et al.   PLoS Computational Biology

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

The Subthalamic Nucleus Is One of Multiple Innervation Sites for Long-Range Corticofugal Axons: A Single-Axon Tracing Study in the Rat

(2012) T. Kita et al.   JOURNAL OF NEUROSCIENCE

Modulation of Striatal Projection Systems by Dopamine

(2011) Charles R. Gerfen et al.   Annual Review of Neuroscience

Sensory maps in the olfactory cortex defined by long-range viral tracing of single neurons

(2011) Sulagna Ghosh et al.   NATURE

BrainAligner: 3D registration atlases of Drosophila brains

(2011) Hanchuan Peng et al.   NATURE METHODS

Three-dimensional axon morphologies of individual layer 5 neurons indicate cell type-specific intracortical pathways for whisker motion and touch

(2011) M. Oberlaender et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A principal skeleton algorithm for standardizing confocal images of fruit fly nervous systems

(2010) L. Qu et al.   BIOINFORMATICS

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

(2010) Hanchuan Peng et al.   NATURE BIOTECHNOLOGY

Micro-Optical Sectioning Tomography to Obtain a High-Resolution Atlas of the Mouse Brain

(2010) A. Li et al.   SCIENCE

Two Types of Thalamocortical Projections from the Motor Thalamic Nuclei of the Rat: A Single Neuron-Tracing Study Using Viral Vectors

(2009) Eriko Kuramoto et al.   CEREBRAL CORTEX

L-Measure: a web-accessible tool for the analysis, comparison and search of digital reconstructions of neuronal morphologies

(2008) Ruggero Scorcioni et al.   Nature Protocols

Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex

(2008)   NATURE REVIEWS NEUROSCIENCE

Genetically-Directed, Cell Type-Specific Sparse Labeling for the Analysis of Neuronal Morphology

(2008) Thomas Rotolo et al.   PLoS One