Genetic divergence and local adaptation of Liriodendron driven by heterogeneous environments

Genomic insights into adaptation to heterogeneous environments for the ancient relictual Circaeaster agrestis (Circaeasteraceae, Ranunculales)

(2020) Xu Zhang et al.   NEW PHYTOLOGIST

Systemic signaling during abiotic stress combination in plants

(2020) Sara I. Zandalinas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Wetlands rise and fall: Six endangered wetland species showed different patterns of habitat shift under future climate change

(2020) Bo Cao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Metabolomics for understanding stomatal movements

(2019) David B. Medeiros et al.   Theoretical and Experimental Plant Physiology

New insight into the phylogeographic pattern of Liriodendron chinense (Magnoliaceae) revealed by chloroplast DNA: east–west lineage split and genetic mixture within western subtropical China

(2019) Aihong Yang et al.   PeerJ

Flowers and climate change: a metabolic perspective

(2019) Monica Borghi et al.   NEW PHYTOLOGIST

Integrating Phylogeographic Analysis and Geospatial Methods to Infer Historical Dispersal Routes and Glacial Refugia of Liriodendron chinense

(2019) Yufang Shen et al.   Forests

PI signal transduction and ubiquitination respond to dehydration stress in the red seaweed Gloiopeltis furcata under successive tidal cycles

(2019) Shun Liu et al.   BMC PLANT BIOLOGY

Coordinated and rapid whole‐plant systemic stomatal responses

(2019) Amith R. Devireddy et al.   NEW PHYTOLOGIST

Fragmented and isolated: limited gene flow coupled with weak isolation by environment in the paleoendemic giant sequoia ( Sequoiadendron giganteum )

(2019) Rainbow DeSilva et al.   AMERICAN JOURNAL OF BOTANY

Comparing methods for detecting multilocus adaptation with multivariate genotype-environment associations

(2018) Brenna R. Forester et al.   MOLECULAR ECOLOGY

The Ancient Phosphatidylinositol 3-Kinase Signaling System Is a Master Regulator of Energy and Carbon Metabolism in Algae

(2018) Rishiram Ramanan et al.   PLANT PHYSIOLOGY

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Ecological and Genetic Divergences with Gene Flow of Two Sister Species (Leucomeris decora and Nouelia insignis) Driving by Climatic Transition in Southwest China

(2018) Yujuan Zhao et al.   Frontiers in Plant Science

Interspecies evolutionary divergence in Liriodendron, evidence from the nucleotide variations of LcDHN-like gene

(2018) Yanli Cheng et al.   BMC EVOLUTIONARY BIOLOGY

Adaptive genetic differentiation in Pterocarya stenoptera (Juglandaceae) driven by multiple environmental variables were revealed by landscape genomics

(2018) Jia-Xin Li et al.   BMC PLANT BIOLOGY

Rapid Responses to Abiotic Stress: Priming the Landscape for the Signal Transduction Network

(2018) Hannes Kollist et al.   TRENDS IN PLANT SCIENCE

RAD-Seq Data Point to a Distinct Split in Liriodendron (Magnoliaceae) and Obvious East–West Genetic Divergence in L. chinense

(2018) Yongda Zhong et al.   Forests

Adaptive variation in natural Alpine populations of Norway spruce ( Picea abies [L.] Karst) at regional scale: Landscape features and altitudinal gradient effects

(2017) Erica A. Di Pierro et al.   FOREST ECOLOGY AND MANAGEMENT

The Study of Local Adaptation: A Thriving Field of Research

(2017) Lynda F Delph   JOURNAL OF HEREDITY

Population transcriptomes reveal synergistic responses of DNA polymorphism and RNA expression to extreme environments on the Qinghai-Tibetan Plateau in a predatory bird

(2017) Shengkai Pan et al.   MOLECULAR ECOLOGY

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Ten Years of Landscape Genomics: Challenges and Opportunities

(2017) Yong Li et al.   Frontiers in Plant Science

Plant phosphoinositide signaling - dynamics on demand

(2016) Ingo Heilmann   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

Pooled ecotype sequencing reveals candidate genetic mechanisms for adaptive differentiation and reproductive isolation

(2016) Billie A. Gould et al.   MOLECULAR ECOLOGY

Genetic consequences of Quaternary climatic oscillations in the Himalayas: Primula tibetica as a case study based on restriction site-associated DNA sequencing

(2016) Guangpeng Ren et al.   NEW PHYTOLOGIST

Circadian Clock and Photoperiodic Flowering in Arabidopsis: CONSTANS Is a Hub for Signal Integration

(2016) Jae Sung Shim et al.   PLANT PHYSIOLOGY

Impacts of biogeographic history and marginal population genetics on species range limits: a case study of Liriodendron chinense

(2016) Aihong Yang et al.   Scientific Reports

The rhythmic expression of genes controlling flowering time in southern and northern populations of invasive Ambrosia artemisiifolia

(2015) Xiao-Meng Li et al.   Journal of Plant Ecology

A practical guide to environmental association analysis in landscape genomics

(2015) Christian Rellstab et al.   MOLECULAR ECOLOGY

Ten years of transcriptomics in wild populations: what have we learned about their ecology and evolution?

(2015) Mariano Alvarez et al.   MOLECULAR ECOLOGY

The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

(2015) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Population genetics of freeze tolerance among natural populations ofPopulus balsamiferaacross the growing season

(2015) Mitra Menon et al.   NEW PHYTOLOGIST

Crosstalk between Two bZIP Signaling Pathways Orchestrates Salt-Induced Metabolic Reprogramming in Arabidopsis Roots

(2015) Laura Hartmann et al.   PLANT CELL

The rhythmic expression of genes controlling flowering time in southern and northern populations of invasive Ambrosia artemisiifolia

(2015) Xiao-Meng Li et al.   Journal of Plant Ecology

A MYB-Domain Protein EFM Mediates Flowering Responses to Environmental Cues in Arabidopsis

(2014) Yuanyuan Yan et al.   DEVELOPMENTAL CELL

LANDSCAPE GENOMICS OFPOPULUS TRICHOCARPA: THE ROLE OF HYBRIDIZATION, LIMITED GENE FLOW, AND NATURAL SELECTION IN SHAPING PATTERNS OF POPULATION STRUCTURE

(2014) Armando Geraldes et al.   EVOLUTION

Genetic considerations in ecosystem restoration using native tree species

(2014) Evert Thomas et al.   FOREST ECOLOGY AND MANAGEMENT

Regulation of flowering time by the miR156-mediated age pathway

(2014) Jia-Wei Wang   JOURNAL OF EXPERIMENTAL BOTANY

Natural Variation in Abiotic Stress Responsive Gene Expression and Local Adaptation to Climate in Arabidopsis thaliana

(2014) Jesse R. Lasky et al.   MOLECULAR BIOLOGY AND EVOLUTION

Climatic adaptation and ecological divergence between two closely related pine species in Southeast China

(2014) Yongfeng Zhou et al.   MOLECULAR ECOLOGY

Detecting short spatial scale local adaptation and epistatic selection in climate-related candidate genes in European beech (Fagus sylvatica) populations

(2014) Katalin Csilléry et al.   MOLECULAR ECOLOGY

Divergent population structure and climate associations of a chromosomal inversion polymorphism across theMimulus guttatusspecies complex

(2014) Elen Oneal et al.   MOLECULAR ECOLOGY

Transcriptome resources for the white-footed mouse (Peromyscus leucopus): new genomic tools for investigating ecologically divergent urban and rural populations

(2014) Stephen E. Harris et al.   Molecular Ecology Resources

Phenotypic and genetic evidence for ecological speciation ofAquilegia japonicaandA. oxysepala

(2014) Lin-Feng Li et al.   NEW PHYTOLOGIST

Mesophyll photosynthesis and guard cell metabolism impacts on stomatal behaviour

(2014) Tracy Lawson et al.   NEW PHYTOLOGIST

SDMtoolbox: a python-based GIS toolkit for landscape genetic, biogeographic and species distribution model analyses

(2014) Jason L. Brown   Methods in Ecology and Evolution

Salt-Induced Stabilization of EIN3/EIL1 Confers Salinity Tolerance by Deterring ROS Accumulation in Arabidopsis

(2014) Jinying Peng et al.   PLoS Genetics

Survival of a tertiary relict species, Liriodendron chinense (Magnoliaceae), in southern China, with special reference to village fengshui forests

(2013) Cindy Q. Tang et al.   AMERICAN JOURNAL OF BOTANY

Assisted Gene Flow to Facilitate Local Adaptation to Climate Change

(2013) Sally N. Aitken et al.   Annual Review of Ecology Evolution and Systematics

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

(2013) Eric Frichot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial

(2013) Jochen B. W. Wolf   Molecular Ecology Resources

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Geological and ecological factors drive cryptic speciation of yews in a biodiversity hotspot

(2013) Jie Liu et al.   NEW PHYTOLOGIST

Impact of Geography and Climate on the Genetic Differentiation of the Subtropical Pine Pinus yunnanensis

(2013) Baosheng Wang et al.   PLoS One

Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis

(2013) Katherine Noelani Chang et al.   eLife

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Targeted sequence capture as a powerful tool for evolutionary analysis1

(2012) Corrinne E. Grover et al.   AMERICAN JOURNAL OF BOTANY

Plant gene regulation in response to abiotic stress

(2012) Lars Hennig   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

AtIQM1, a novel calmodulin-binding protein, is involved in stomatal movement in Arabidopsis

(2012) Yu-Ping Zhou et al.   PLANT MOLECULAR BIOLOGY

Phenotypic plasticity and adaptive evolution contribute to advancing flowering phenology in response to climate change

(2012) J. T. Anderson et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

What is needed for next-generation ecological and evolutionary genomics?

(2012) Scott A. Pavey et al.   TRENDS IN ECOLOGY & EVOLUTION

Phylogeographic studies of plants in China: Advances in the past and directions in the future

(2012) Jian-Quan LIU et al.   Journal of Systematics and Evolution

Climate Relicts: Past, Present, Future

(2011) Arndt Hampe et al.   Annual Review of Ecology Evolution and Systematics

Spatial evolutionary and ecological vicariance analysis (SEEVA), a novel approach to biogeography and speciation research, with an example from Brazilian Gentianaceae

(2011) Lena Struwe et al.   JOURNAL OF BIOGEOGRAPHY

Plant molecular phylogeography in China and adjacent regions: Tracing the genetic imprints of Quaternary climate and environmental change in the world’s most diverse temperate flora

(2011) Ying-Xiong Qiu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences

(2011) John E. McCormack et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Climate change and evolutionary adaptation

(2011) Ary A. Hoffmann et al.   NATURE

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Heterodimers of theArabidopsisTranscription Factors bZIP1 and bZIP53 Reprogram Amino Acid Metabolism during Low Energy Stress

(2011) Katrin Dietrich et al.   PLANT CELL

Identification of anArabidopsisPlasma Membrane–Located ATP Transporter Important for Anther Development

(2011) Benjamin Rieder et al.   PLANT CELL

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

Adaptation to Climate Across the Arabidopsis thaliana Genome

(2011) A. M. Hancock et al.   SCIENCE

ENMTools: a toolbox for comparative studies of environmental niche models

(2010) Dan L. Warren et al.   ECOGRAPHY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Comparison of the Mantel test and alternative approaches for detecting complex multivariate relationships in the spatial analysis of genetic data

(2010) PIERRE LEGENDRE et al.   Molecular Ecology Resources

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Fine-scale spatial genetic structure and gene flow in a small, fragmented population of Sinojackia rehderiana (Styracaceae), an endangered tree species endemic to China

(2010) X. Yao et al.   PLANT BIOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Ambient temperature signaling in plants: An emerging field in the regulation of flowering time

(2009) Jeong Hwan Lee et al.   JOURNAL OF PLANT BIOLOGY

Evidence for Ecological Speciation and Its Alternative

(2009) D. Schluter   SCIENCE

Ecological explanations for (incomplete) speciation

(2009) Patrik Nosil et al.   TRENDS IN ECOLOGY & EVOLUTION

Adaptive radiation, nonadaptive radiation, ecological speciation and nonecological speciation

(2009) Rebecca J. Rundell et al.   TRENDS IN ECOLOGY & EVOLUTION

ENVIRONMENTAL NICHE EQUIVALENCY VERSUS CONSERVATISM: QUANTITATIVE APPROACHES TO NICHE EVOLUTION

(2008) Dan L. Warren et al.   EVOLUTION