RAD-Seq Data Point to a Distinct Split in Liriodendron (Magnoliaceae) and Obvious East–West Genetic Divergence in L. chinense

Integrating restriction site-associated DNA sequencing (RAD-seq) with morphological cladistic analysis clarifies evolutionary relationships among major species groups of bee orchids

(2018) Richard M Bateman et al.   ANNALS OF BOTANY

Resolving relationships and phylogeographic history of the Nyssa sylvatica complex using data from RAD-seq and species distribution modeling

(2018) Wenbin Zhou et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic diversity anomaly in angiosperms between eastern Asia and eastern North America

(2017) Hong Qian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RAD-seq data point to a northern origin of the arctic–alpine genus Cassiope (Ericaceae)

(2016) Yan Hou et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

RAD sequencing enables unprecedented phylogenetic resolution and objective species delimitation in recalcitrant divergent taxa

(2016) Santiago Herrera et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Impacts of biogeographic history and marginal population genetics on species range limits: a case study of Liriodendron chinense

(2016) Aihong Yang et al.   Scientific Reports

AFLP Genome Scanning Reveals Divergent Selection in Natural Populations of Liriodendron chinense (Magnoliaceae) along a Latitudinal Transect

(2016) Ai-Hong Yang et al.   Frontiers in Plant Science

A RAD-based phylogenetics for Orestias fishes from Lake Titicaca

(2015) Tetsumi Takahashi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

High genetic diversity but limited gene flow among remnant and fragmented natural populations of Liriodendron chinense Sarg

(2014) Kangqin Li et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Application of RAD-based phylogenetics to complex relationships among variously related taxa in a species flock

(2014) Tetsumi Takahashi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Comparative phylogeography of the Smilax hispida group (Smilacaceae) in eastern Asia and North America – Implications for allopatric speciation, causes of diversity disparity, and origins of temperate elements in Mexico

(2013) Yunpeng Zhao et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Population genomic analyses from low-coverage RAD-Seq data: a case study on the non-model cucurbit bottle gourd

(2013) Pei Xu et al.   PLANT JOURNAL

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

(2012) R. Peakall et al.   BIOINFORMATICS

Molecular phylogeny and biogeography ofAstilbe(Saxifragaceae) in Asia and eastern North America

(2012) Wei-Dong Zhu et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence

(2011) Frank M You et al.   BMC GENOMICS

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

(2011) Xun Xu et al.   NATURE BIOTECHNOLOGY

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Genome-wide patterns of genetic variation among elite maize inbred lines

(2010) Jinsheng Lai et al.   NATURE GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

(2008) Evandro Novaes et al.   BMC GENOMICS

Phylogenetic and biogeographic complexity of Magnoliaceae in the Northern Hemisphere inferred from three nuclear data sets

(2008) Ze-Long Nie et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One