Assessment of marine benthic diatom communities: insights from a combined morphological–metabarcoding approach in Mediterranean shallow coastal waters

Resolving cryptic species complexes in marine protists: phylogenetic haplotype networks meet global DNA metabarcoding datasets

(2021) Daniele De Luca et al.   ISME Journal

Intertidal mussel reefs change the composition and size distribution of diatoms in the biofilm

(2021) Rosyta Andriana et al.   MARINE BIOLOGY

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

(2021) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

The Future of DNA Barcoding: Reflections from Early Career Researchers

(2021) Danielle M. Grant et al.   Diversity-Basel

High-throughput sequencing analysis reveals dynamic seasonal succession of diatom assemblages in a temperate tidal flat

(2020) Sung Min An et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Phylogenetic diversity and environment form assembly rules for Arctic diatom genera—A study on recent and ancient sedimentary DNA

(2020) Kathleen R. Stoof‐Leichsenring et al.   JOURNAL OF BIOGEOGRAPHY

Trophic plasticity in the sea urchin Paracentrotus lividus, as a function of resource availability and habitat features

(2020) J Camps-Castellà et al.   MARINE ECOLOGY PROGRESS SERIES

Epiphytic diatoms on Gelidiales (Rhodophyta) from Gran Canaria (Spain)

(2020) Milena Polifrone et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Environmental and Spatial Influences on Biogeography and Community Structure of Saltmarsh Benthic Diatoms

(2020) Craig J. Plante et al.   Estuaries and Coasts

Evaluation and sensitivity analysis of diatom DNA metabarcoding for WFD bioassessment of Mediterranean rivers

(2020) Javier Pérez-Burillo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

New pelagophytes show a novel mode of algal colony development and reveal a perforated theca that may define the class

(2020) Richard Wetherbee et al.   JOURNAL OF PHYCOLOGY

Biodiversity of benthic diatom flora in the coastal zone of Puck Bay (southern Baltic Sea): a case study of the Hel Peninsula

(2020) Małgorzata Witak et al.   OCEANOLOGICAL AND HYDROBIOLOGICAL STUDIES

raxmlGUI 2.0: a graphical interface and toolkit for phylogenetic analyses using RAxML

(2020) Daniel Edler et al.   Methods in Ecology and Evolution

Do diatoms dominate benthic production in shallow systems? A case study from a mixed seagrass bed

(2020) T. Erin Cox et al.   Limnology and Oceanography Letters

Assessment of littoral algal diversity from the northern Gulf of Mexico using environmental DNA metabarcoding

(2020) Sergei Bombin et al.   JOURNAL OF PHYCOLOGY

Pinna nobilis in suboptimal environments are more tolerant to disease but more vulnerable to severe weather phenomena

(2020) Patricia Prado et al.   MARINE ENVIRONMENTAL RESEARCH

Multigene Phylogeny, Morphological Observation and Re-examination of the Literature Lead to the Description of the Phaeosacciophyceae Classis Nova and Four New Species of the Heterokontophyta SI Clade

(2020) Louis Graf et al.   PROTIST

Five Non-motile Dinotom Dinoflagellates of the Genus Dinothrix

(2020) Norico Yamada et al.   Frontiers in Plant Science

Controls on diatom biogeography on South Carolina (USA) barrier island beaches

(2020) CJ Plante et al.   MARINE ECOLOGY PROGRESS SERIES

The diversity of benthic diatoms affects ecosystem productivity in heterogeneous coastal environments

(2019) Leena Virta et al.   ECOLOGY

Discovery of a kleptoplastic ‘dinotom’ dinoflagellate and the unique nuclear dynamics of converting kleptoplastids to permanent plastids

(2019) Norico Yamada et al.   Scientific Reports

Epiphytic diatom assemblages on invasive Caulerpa taxifolia and autochthonous Halimeda tuna and Padina sp. seaweeds in the Adriatic Sea – summer/autumn aspect

(2019) Ana Car et al.   OCEANOLOGICAL AND HYDROBIOLOGICAL STUDIES

Applicability of DNA metabarcoding approach in the bioassessment of Portuguese rivers using diatoms

(2019) Andreia Mortágua et al.   ECOLOGICAL INDICATORS

Breeding, planktonic and settlement factors shape recruitment patterns of one of the last remaining major population of Pinna nobilis within Spanish waters

(2019) Patricia Prado et al.   HYDROBIOLOGIA

Diat.barcode, an open-access curated barcode library for diatoms

(2019) Frédéric Rimet et al.   Scientific Reports

Multivariate analyses document host specificity, differences in the diatom metaphyton vs. epiphyton, and seasonality that structure the epiphytic diatom community

(2018) Linda K. Medlin et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Seagrass epiphytic assemblages are strong indicators of agricultural discharge but weak indicators of host features

(2018) Patricia Prado   ESTUARINE COASTAL AND SHELF SCIENCE

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Do we similarly assess diversity with microscopy and high-throughput sequencing? Case of microalgae in lakes

(2018) Frédéric Rimet et al.   ORGANISMS DIVERSITY & EVOLUTION

DNA metabarcoding and microscopic analyses of sea turtles biofilms: Complementary to understand turtle behavior

(2018) Sinziana F. Rivera et al.   PLoS One

Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring

(2018) Valentin Vasselon et al.   Methods in Ecology and Evolution

The morphology and molecular phylogenetics of some marine diatom taxa within the Fragilariaceae, including twenty undescribed species and their relationship to Nanofrustulum, Opephora and Pseudostaurosira

(2018) CHUN L. LI et al.   Phytotaxa

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes

(2018) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Diverse Internal Symbiont Community in the Endosymbiotic Foraminifera Pararotalia calcariformata: Implications for Symbiont Shuffling Under Thermal Stress

(2018) Christiane Schmidt et al.   Frontiers in Microbiology

Kleptoplastidic benthic foraminifera from aphotic habitats: insights into assimilation of inorganic C, N and S studied with sub-cellular resolution

(2018) Thierry Jauffrais et al.   ENVIRONMENTAL MICROBIOLOGY

Environmental DNA (eDNA) metabarcoding reveals strong discrimination among diverse marine habitats connected by water movement

(2018) Gert-Jan Jeunen et al.   Molecular Ecology Resources

Diatom diversity through HTS-metabarcoding in coastal European seas

(2018) Roberta Piredda et al.   Scientific Reports

A combined morphological and molecular approach to Nitzschia varelae sp. nov., with discussion of symmetry in Bacillariaceae

(2017) Rafael Carballeira et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

(2017) Kristy Deiner et al.   MOLECULAR ECOLOGY

Photosynthetic epibionts and endobionts of Pacific oyster shells from oyster reefs in rocky versus mudflat shores

(2017) Laurent Barillé et al.   PLoS One

Benthic foraminifera as indicators of habitat in a Mediterranean delta: implications for ecological and palaeoenvironmental studies

(2016) Xavier Benito et al.   ESTUARINE COASTAL AND SHELF SCIENCE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Species diversity of the genusThalassiosira(Thalassiosirales, Bacillariophyta) in South Korea and its biogeographical distribution in the world

(2016) Joon Sang Park et al.   PHYCOLOGIA

Insights into global diatom distribution and diversity in the world’s ocean

(2016) Shruti Malviya et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Benthic diatoms in a Mediterranean delta: ecological indicators and a conductivity transfer function for paleoenvironmental studies

(2015) Xavier Benito et al.   JOURNAL OF PALEOLIMNOLOGY

Peridiniopsis jiulongensis, a new freshwater dinoflagellate with a diatom endosymbiont from China

(2015) Xuejing You et al.   NOVA HEDWIGIA

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Changes in the global value of ecosystem services

(2014) Robert Costanza et al.   GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS

Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies

(2014) Jonas Zimmermann et al.   Molecular Ecology Resources

Habitat use by a large population of Pinna nobilis in shallow waters

(2014) Patricia Prado et al.   SCIENTIA MARINA

A next-generation sequencing approach to river biomonitoring using benthic diatoms

(2014) Lenaïg Kermarrec et al.   Freshwater Science

Morphological and molecular phylogenetic studies onFistulifera saprophila

(2013) Aleksandra Zgrundo et al.   DIATOM RESEARCH

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The genus Thalassiosira off the Guangdong coast, South China Sea

(2012) Yang Li et al.   BOTANICA MARINA

Microphytobenthic dynamics in a Wadden Sea intertidal flat – Part I: Seasonal and spatial variation of diatom communities in relation to macronutrient supply

(2012) Bettina Scholz et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Microphytobenthic dynamics in a Wadden Sea intertidal flat – Part II: Seasonal and spatial variability of non-diatom community components in relation to abiotic parameters

(2012) Bettina Scholz et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Life-forms, cell-sizes and ecological guilds of diatoms in European rivers

(2012) F. Rimet et al.   Knowledge and Management of Aquatic Ecosystems

Reinterpretation of two diatom species from the West Greenland margin — Thalassiosira kushirensis and Thalassiosira antarctica var. borealis — hydrological consequences

(2012) Diana W. Krawczyk et al.   MARINE MICROPALEONTOLOGY

Synchroma pusillum sp. nov. and other New Algal Isolates with Chloroplast Complexes Confirm the Synchromophyceae (Ochrophyta) as a Widely Distributed Group of Amoeboid Algae

(2012) Maria Schmidt et al.   PROTIST

Phytoplankton diversity during the spring bloom in the northwestern Mediterranean Sea

(2011) Isabella Percopo et al.   BOTANICA MARINA

Hydrographical forcing and phytoplankton variability in two semi-enclosed estuarine bays

(2011) Clara Llebot et al.   JOURNAL OF MARINE SYSTEMS

Molecular Identification of Sequestered Diatom Chloroplasts and Kleptoplastidy in Foraminifera

(2010) Loïc Pillet et al.   PROTIST

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

A comparative study of Cocconeis scutellum Ehrenberg and its varieties (Bacillariophyta)

(2008) Mario De Stefano et al.   BOTANICA MARINA

Lagoonal stormwater detention ponds as promoters of harmful algal blooms and eutrophication along the South Carolina coast

(2008) Alan J. Lewitus et al.   HARMFUL ALGAE

Resting spore formation in the marine diatom Thalassiosira nordenskioeldii under iron- and nitrogen-limited conditions

(2008) K. Sugie et al.   JOURNAL OF PLANKTON RESEARCH

Serial Replacement of Diatom Endosymbionts in Two Freshwater Dinoflagellates, Peridiniopsis spp. (Peridiniales, Dinophyceae)

(2008) Yoshihito Takano et al.   PHYCOLOGIA