From ZikV genome to vaccine:in silicoapproach for the epitope-based peptide vaccine against Zika virus envelope glycoprotein

Concern over Zika virus grips the world

(2016) Udani Samarasekera et al.   LANCET

The I-TASSER Suite: protein structure and function prediction

(2015) Jianyi Yang et al.   NATURE METHODS

Design of a heterosubtypic epitope-based peptide vaccine fused with hemokinin-1 against influenza viruses

(2015) Shahla Shahsavandi et al.   VIROLOGICA SINICA

In silico predicted mycobacterial epitope elicits in vitro T-cell responses

(2014) Md Kawsar Khan et al.   MOLECULAR IMMUNOLOGY

Generation of a universal CD4 memory T cell recall peptide effective in humans, mice and non-human primates

(2014) Christopher C. Fraser et al.   VACCINE

Molecular Evolution of Zika Virus during Its Emergence in the 20th Century

(2014) Oumar Faye et al.   PLoS Neglected Tropical Diseases

PREDIVAC: CD4+ T-cell epitope prediction for vaccine design that covers 95% of HLA class II DR protein diversity

(2013) Patricio Oyarzún et al.   BMC BIOINFORMATICS

MHC-NP: Predicting peptides naturally processed by the MHC

(2013) Sébastien Giguère et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Properties of MHC Class I Presented Peptides That Enhance Immunogenicity

(2013) Jorg J. A. Calis et al.   PLoS Computational Biology

Defining and searching for structural motifs using DeepView/Swiss-PdbViewer

(2012) Maria U Johansson et al.   BMC BIOINFORMATICS

Mutation analysis of the cross-reactive epitopes of Japanese encephalitis virus envelope glycoprotein

(2012) S.-S. Chiou et al.   JOURNAL OF GENERAL VIROLOGY

PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides

(2012) P. Thevenet et al.   NUCLEIC ACIDS RESEARCH

Peptide binding prediction for the human class II MHC allele HLA-DP2: a molecular docking approach

(2011) Atanas Patronov et al.   BMC STRUCTURAL BIOLOGY

AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility

(2009) Garrett M. Morris et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Application of pharmacogenomics to vaccines

(2009) Gregory A Poland et al.   PHARMACOGENOMICS

AllerHunter: A SVM-Pairwise System for Assessment of Allergenicity and Allergic Cross-Reactivity in Proteins

(2009) Hon Cheng Muh et al.   PLoS One

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8–11

(2008) Claus Lundegaard et al.   NUCLEIC ACIDS RESEARCH