Molecular Evolution of Zika Virus during Its Emergence in the 20th Century

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Genetic Characterization of Zika Virus Strains: Geographic Expansion of the Asian Lineage

(2012) Andrew D. Haddow et al.   PLoS Neglected Tropical Diseases

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

(2011) F. Bielejec et al.   BIOINFORMATICS

The performance of the Congruence Among Distance Matrices (CADM) test in phylogenetic analysis

(2011) Véronique Campbell et al.   BMC EVOLUTIONARY BIOLOGY

Why do RNA viruses recombine?

(2011) Etienne Simon-Loriere et al.   NATURE REVIEWS MICROBIOLOGY

RDP3: a flexible and fast computer program for analyzing recombination

(2010) D. P. Martin et al.   BIOINFORMATICS

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

Both E Protein Glycans Adversely Affect Dengue Virus Infectivity but Are Beneficial for Virion Release

(2010) E. Lee et al.   JOURNAL OF VIROLOGY

GiRaF: robust, computational identification of influenza reassortments via graph mining

(2010) Niranjan Nagarajan et al.   NUCLEIC ACIDS RESEARCH

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Zika Virus Outbreak on Yap Island, Federated States of Micronesia

(2009) Mark R. Duffy et al.   NEW ENGLAND JOURNAL OF MEDICINE

Accurate Detection of Recombinant Breakpoints in Whole-Genome Alignments

(2009) Oscar Westesson et al.   PLoS Computational Biology

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

One-step RT-PCR for detection of Zika virus

(2008) Oumar Faye et al.   JOURNAL OF CLINICAL VIROLOGY

Correlating viral phenotypes with phylogeny: Accounting for phylogenetic uncertainty

(2007) Joe Parker et al.   INFECTION GENETICS AND EVOLUTION