PREDIVAC: CD4+ T-cell epitope prediction for vaccine design that covers 95% of HLA class II DR protein diversity

Computational Modelling of Linear Motif-Mediated Protein Interactions

(2012) Bostjan Kobe et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

The Utility and Limitations of Current Web-Available Algorithms To Predict Peptides Recognized by CD4 T Cells in Response to Pathogen Infection

(2012) F. A. Chaves et al.   JOURNAL OF IMMUNOLOGY

TEPITOPEpan: Extending TEPITOPE for Peptide Binding Prediction Covering over 700 HLA-DR Molecules

(2012) Lianming Zhang et al.   PLoS One

Promiscuous binding of extracellular peptides to cell surface class I MHC protein

(2012) H. N. Eisen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of specificity determining residues in peptide recognition domains using an information theoretic approach applied to large-scale binding maps

(2011) Kevin Y Yip et al.   BMC BIOLOGY

Toward more accurate pan-specific MHC-peptide binding prediction: a review of current methods and tools

(2011) L. Zhang et al.   BRIEFINGS IN BIOINFORMATICS

Predicting Protein Kinase Specificity: Predikin Update and Performance in the DREAM4 Challenge

(2011) Jonathan J. Ellis et al.   PLoS One

An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies

(2010) Pavel V Mazin et al.   Algorithms for Molecular Biology

Ligand binding assays at equilibrium: validation and interpretation

(2010) Edward C. Hulme et al.   BRITISH JOURNAL OF PHARMACOLOGY

Innovative bioinformatic approaches for developing peptide-based vaccines against hypervariable viruses

(2010) Danylo Sirskyj et al.   IMMUNOLOGY AND CELL BIOLOGY

Repertoire of HLA-DR1-Restricted CD4 T-Cell Responses to Capsular Caf1 Antigen of Yersinia pestis in Human Leukocyte Antigen Transgenic Mice

(2010) J. A. Musson et al.   INFECTION AND IMMUNITY

Quantum Chemical Analysis of MHC-Peptide Interactions for Vaccine Design

(2010) W.A. Agudelo et al.   MINI-REVIEWS IN MEDICINAL CHEMISTRY

Limitations of Ab Initio Predictions of Peptide Binding to MHC Class II Molecules

(2010) Hao Zhang et al.   PLoS One

A Vaccine Encoding Conserved Promiscuous HIV CD4 Epitopes Induces Broad T Cell Responses in Mice Transgenic to Multiple Common HLA Class II Molecules

(2010) Susan Pereira Ribeiro et al.   PLoS One

High-energy water sites determine peptide binding affinity and specificity of PDZ domains

(2009) Thijs Beuming et al.   PROTEIN SCIENCE

Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan

(2008) Morten Nielsen et al.   PLoS Computational Biology