Cryo-Treatment Enhances the Embryogenicity of Mature Somatic Embryos via the lncRNA–miRNA–mRNA Network in White Spruce

MicroRNA Zma-miR528 Versatile Regulation on Target mRNAs during Maize Somatic Embryogenesis

(2021) Eduardo Luján-Soto et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A transcriptional hub integrating gibberellin-brassinosteroid signals to promote seed germination in Arabidopsis

(2021) Chunmei Zhong et al.   JOURNAL OF EXPERIMENTAL BOTANY

Reproductive Potential of Conifers, Somatic Embryogenesis and Apomixis

(2021) I. N. Tretyakova et al.   Russian Journal of Developmental Biology

Identification of mRNA-, circRNA- and lncRNA- Associated ceRNA Networks and Potential Biomarkers for Preeclampsia From Umbilical Vein Endothelial Cells

(2021) Dan Chen et al.   Frontiers in Molecular Biosciences

Genome-wide profiling of long noncoding RNAs involved in wheat spike development

(2021) Pei Cao et al.   BMC GENOMICS

Most drought-induced DNA methylation changes switched to pre-stress state after re-irrigation in barley (Hordeum vulgare L.) cultivars

(2021) Ali Falahi et al.   CEREAL RESEARCH COMMUNICATIONS

Transcriptomic, Metabolomic, and Physiological Analyses Reveal That the Culture Temperatures Modulate the Cryotolerance and Embryogenicity of Developing Somatic Embryos in Picea glauca

(2021) Ying Cui et al.   Frontiers in Plant Science

Somatic embryogenesis in mature zygotic embryos of Picea pungens

(2021) Jing Tao et al.   Scientific Reports

Transcriptome-wide identification and profiling of miRNAs in a stress-tolerant conifer Sabina chinensis

(2020) Xian-Ge Hu et al.   JOURNAL OF BIOSCIENCES

Identification and characterization of long non‐coding RNAs as competing endogenous RNAs in the cold stress response of Triticum aestivum

(2020) Q. Lu et al.   PLANT BIOLOGY

The ASHR3 SET-Domain Protein is a Pivotal Upstream Coordinator for Wound-Induced Callus Formation in Arabidopsis

(2020) Kyounghee Lee et al.   JOURNAL OF PLANT BIOLOGY

Biochemical and antifungal characteristics of recombinant class I chitinase from Drosera rotundifolia

(2020) Miroslav Rajninec et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Genome-wide identification, characterization, and expression analysis related to autotoxicity of the GST gene family in Cucumis melo L.

(2020) Jingrong Wang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genome-wide Identification of WRKY transcription factor family members in sorghum (Sorghum bicolor (L.) moench)

(2020) Elamin Hafiz Baillo et al.   PLoS One

Interactions and links among the noncoding RNAs in plants under stresses

(2020) Xiaoxu Zhou et al.   THEORETICAL AND APPLIED GENETICS

Transcriptomic profiles of non-embryogenic and embryogenic callus cells in a highly regenerative upland cotton line (Gossypium hirsutum L.)

(2020) Li Wen et al.   BMC DEVELOPMENTAL BIOLOGY

Comprehensive analysis of the isomiRome in the vegetative organs of the conifer Pinus pinaster under contrasting water availability

(2020) Pedro Perdiguero et al.   PLANT CELL AND ENVIRONMENT

Dynamics of physiological and miRNA changes after long-term proliferation in somatic embryogenesis of Picea balfouriana

(2019) Qingfen Li et al.   TREES-STRUCTURE AND FUNCTION

The Plant-Transpiration Response to Vapor Pressure Deficit (VPD) in Durum Wheat Is Associated With Differential Yield Performance and Specific Expression of Genes Involved in Primary Metabolism and Water Transport

(2019) Susan Medina et al.   Frontiers in Plant Science

Somatic Embryogenesis Induction in Woody Species: The Future After OMICs Data Assessment

(2019) Maria Salomé Pais   Frontiers in Plant Science

Long noncoding RNA MPRL promotes mitochondrial fission and cisplatin chemosensitivity via disruption of pre-miRNA processing

(2019) Tian Tian et al.   CLINICAL CANCER RESEARCH

Characterization and cloning of grape circular RNAs identified the cold resistance-related Vv-circATS1

(2019) Zhen Gao et al.   PLANT PHYSIOLOGY

Genome-wide analysis of the WRKY gene family and its response to abiotic stress in buckwheat (Fagopyrum tataricum)

(2019) Xia He et al.   Open Life Sciences

Mechanisms of lncRNA/microRNA interactions in angiogenesis

(2019) Zhuo Zhao et al.   LIFE SCIENCES

DNA methylation levels in different tissues in tea plant via an optimized HPLC method

(2019) Ying Gao et al.   Horticulture Environment and Biotechnology

The role of auxin transporters and receptors in adventitious rooting of Arabidopsis thaliana pre-etiolated flooded seedlings

(2019) Cibele Tesser da Costa et al.   PLANT SCIENCE

Crosstalk of mRNA, miRNA, lncRNA, and circRNA and Their Regulatory Pattern in Pulmonary Fibrosis

(2019) Changye Li et al.   Molecular Therapy-Nucleic Acids

Natural variation of DNA methylation and gene expression may determine local adaptations of Scots pine populations

(2018) Emmi Alakärppä et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide identification and characterization of long non-coding RNAs involved in the early somatic embryogenesis in Dimocarpus longan Lour

(2018) Yan Chen et al.   BMC GENOMICS

Analysis of the oligopeptide transporter gene family in Ganoderma lucidum: structure, phylogeny, and expression patterns

(2017) Quanju Xiang et al.   GENOME

Conservation analysis of long non-coding RNAs in plants

(2017) Pingchuan Deng et al.   Science China-Life Sciences

Small RNAs: Big Impact on Plant Development

(2017) Marco D’Ario et al.   TRENDS IN PLANT SCIENCE

In Silico Analysis of Small RNAs Suggest Roles for Novel and Conserved miRNAs in the Formation of Epigenetic Memory in Somatic Embryos of Norway Spruce

(2017) Igor A. Yakovlev et al.   Frontiers in Physiology

Soybean miR172a Improves Salt Tolerance and Can Function as a Long-Distance Signal

(2016) Wen-Jia Pan et al.   Molecular Plant

Molecular and cellular characterization of GA-Stimulated Transcripts GASA4 and GASA6 in Arabidopsis thaliana

(2016) Jie Qu et al.   PLANT SCIENCE

Circular RNA Expression: Its Potential Regulation and Function

(2016) Julia Salzman   TRENDS IN GENETICS

DNA-methylation changes induced by salt stress in wheat Triticum aestivum

(2016) Zhong Lan et al.   AFRICAN JOURNAL OF BIOTECHNOLOGY

Plant glutathione S-transferase classification, structure and evolution

(2016) Mohsenzadeh Sasan et al.   AFRICAN JOURNAL OF BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

The microRNA167 controls somatic embryogenesis in Arabidopsis through regulating its target genes ARF6 and ARF8

(2015) Ying Hua Su et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Battles and hijacks: noncoding transcription in plants

(2015) Federico Ariel et al.   TRENDS IN PLANT SCIENCE

LncTar: a tool for predicting the RNA targets of long noncoding RNAs

(2014) Jianwei Li et al.   BRIEFINGS IN BIOINFORMATICS

The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones

(2014) Thomas R. Cech et al.   CELL

Comparative quantitative proteomic analysis of embryogenic and non-embryogenic calli in maize suggests the role of oxylipins in plant totipotency

(2014) Miroslava Varhaníková et al.   Journal of Proteomics

Epigenetic responses to drought stress in rice (Oryza sativa L.)

(2013) Gayacharan et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Dynamic expression of small RNA populations in larch (Larix leptolepis)

(2012) Junhong Zhang et al.   PLANTA

Comparative Transcriptome Profiling of Chilling Stress Responsiveness in Two Contrasting Rice Genotypes

(2012) Ting Zhang et al.   PLoS One

Evolution of the Oligopeptide Transporter Family

(2011) Kenny M. Gomolplitinant et al.   JOURNAL OF MEMBRANE BIOLOGY

The auxin influx carriers AUX1 and LAX3 are involved in auxin-ethylene interactions during apical hook development in Arabidopsis thaliana seedlings

(2010) F. Vandenbussche et al.   DEVELOPMENT

Expression profile of PIN, AUX/LAX and PGP auxin transporter gene families in Sorghum bicolor under phytohormone and abiotic stress

(2010) ChenJia Shen et al.   FEBS Journal

MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce

(2010) Igor A. Yakovlev et al.   NEW PHYTOLOGIST

A novel method of cryopreservation without a cryoprotectant for immature somatic embryos of conifer

(2010) Lisheng Kong et al.   PLANT CELL TISSUE AND ORGAN CULTURE

A Novel MYBS3-Dependent Pathway Confers Cold Tolerance in Rice

(2010) C. F. Su et al.   PLANT PHYSIOLOGY

Stage and tissue-specific modulation of ten conserved miRNAs and their targets during somatic embryogenesis of Valencia sweet orange

(2010) Xiao-Meng Wu et al.   PLANTA

Important processes during differentiation and early development of somatic embryos of Norway spruce as revealed by changes in global gene expression

(2010) Daniel Vestman et al.   Tree Genetics & Genomes

Cryotolerance in Norway spruce and its association with growth rates, anatomical features and polyamines of embryogenic cultures

(2010) Z. Vondrakova et al.   TREE PHYSIOLOGY

The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments

(2009) S. A. Bustin et al.   CLINICAL CHEMISTRY

One tissue, two fates: different roles of megagametophyte cells during Scots pine embryogenesis

(2009) Jaana Vuosku et al.   JOURNAL OF EXPERIMENTAL BOTANY

Increasing inositol (1,4,5)-trisphosphate metabolism affects drought tolerance, carbohydrate metabolism and phosphate-sensitive biomass increases in tomato

(2009) Mariya Khodakovskaya et al.   PLANT BIOTECHNOLOGY JOURNAL

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Plant Receptor-Like Serine Threonine Kinases: Roles in Signaling and Plant Defense

(2008) Ahmed J. Afzal et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The auxin influx carrier LAX3 promotes lateral root emergence

(2008) Kamal Swarup et al.   NATURE CELL BIOLOGY

Functional Characterization of PaLAX1, a Putative Auxin Permease, in Heterologous Plant Systems

(2008) K. Hoyerova et al.   PLANT PHYSIOLOGY