Transcriptomic profiles of non-embryogenic and embryogenic callus cells in a highly regenerative upland cotton line (Gossypium hirsutum L.)

Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement

(2020) Z. Jeffrey Chen et al.   NATURE GENETICS

Signaling Overview of Plant Somatic Embryogenesis

(2019) Hugo A. Méndez-Hernández et al.   Frontiers in Plant Science

CRISPR/Cas System: Recent Advances and Future Prospects for Genome Editing

(2019) Hakim Manghwar et al.   TRENDS IN PLANT SCIENCE

Structural basis of the specific interactions of GRAS family proteins

(2018) Toshio Hakoshima   FEBS LETTERS

Rapid genotype “independent” Zea mays L. (maize) transformation via direct somatic embryogenesis

(2018) Keith Lowe et al.   IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT

A Gene Regulatory Network for Cellular Reprogramming in Plant Regeneration

(2018) Momoko Ikeuchi et al.   PLANT AND CELL PHYSIOLOGY

Multi-omics analyses reveal epigenomics basis for cotton somatic embryogenesis through successive regeneration acclimation (SRA) process

(2018) Jianying Li et al.   PLANT BIOTECHNOLOGY JOURNAL

Manipulation of plant architecture and flowering time by down-regulation of the GRAS transcription factor SlGRAS26 in Solanum lycopersicum

(2018) Shengen Zhou et al.   PLANT SCIENCE

Cell wall integrity modulates Arabidopsis thaliana cell cycle gene expression in a cytokinin- and nitrate reductase-dependent manner

(2018) Nora Gigli-Bisceglia et al.   DEVELOPMENT

Magnetic sensitivity mediated by the Arabidopsis blue-light receptor cryptochrome occurs during flavin reoxidation in the dark

(2018) Marootpong Pooam et al.   PLANTA

Characterization and Expression Patterns of Auxin Response Factors in Wheat

(2018) Linyi Qiao et al.   Frontiers in Plant Science

Genome-wide identification and analysis of the evolution and expression patterns of the GATA transcription factors in three species of Gossypium genus

(2018) Zhen Zhang et al.   GENE

Regulation of FUSCA3 Expression During Seed Development in Arabidopsis

(2018) Thomas James Roscoe et al.   PLANT AND CELL PHYSIOLOGY

The BABY BOOM transcription factor activates the LEC1-ABI3-FUS3-LEC2 network to induce somatic embryogenesis

(2017) Anneke Horstman et al.   PLANT PHYSIOLOGY

Prospective Targeted Recombination and Genetic Gains for Quantitative Traits in Maize

(2017) Rex Bernardo   Plant Genome

Going mainstream: How is the body axis of plants first initiated in the embryo?

(2016) Sangho Jeong et al.   DEVELOPMENTAL BIOLOGY

Morphogenic Regulators Baby boom and Wuschel Improve Monocot Transformation

(2016) Keith Lowe et al.   PLANT CELL

Structural and Functional Analysis of the GRAS Gene Family in Grapevine Indicates a Role of GRAS Proteins in the Control of Development and Stress Responses

(2016) Jérôme Grimplet et al.   Frontiers in Plant Science

Comprehensive RNA-Seq Analysis on the Regulation of Tomato Ripening by Exogenous Auxin

(2016) Jiayin Li et al.   PLoS One

Stress induces cell dedifferentiation in plants

(2015) Gideon Grafi et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor

(2015) Sergio L Florez et al.   BMC PLANT BIOLOGY

Mathematical modelling ofWOX5- andCLE40-mediated columella stem cell homeostasis inArabidopsis

(2015) Sarah Richards et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mutation inBrachypodiumcaffeic acidO-methyltransferase 6 alters stem and grain lignins and improves straw saccharification without deteriorating grain quality

(2015) Séverine Ho-Yue-Kuang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Reevaluation of the CLV3-receptor interaction in the shoot apical meristem: dissection of the CLV3 signaling pathway from a direct ligand-binding point of view

(2015) Hidefumi Shinohara et al.   PLANT JOURNAL

B-GATA transcription factors – insights into their structure, regulation, and role in plant development

(2015) Carina Behringer et al.   Frontiers in Plant Science

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Phosphorylation of a WRKY Transcription Factor by MAPKs Is Required for Pollen Development and Function in Arabidopsis

(2014) Yuefeng Guan et al.   PLoS Genetics

Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization

(2013) Assa Florentin et al.   DEVELOPMENTAL DYNAMICS

Transcription factor-mediated cell-to-cell signalling in plants

(2013) X. Han et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptome Profiling Reveals Auxin and Cytokinin Regulating Somatic Embryogenesis in Different Sister Lines of Cotton Cultivar CCRI24

(2013) Zhenzhen Xu et al.   Journal of Integrative Plant Biology

ABSCISIC ACID INSENSITIVE3 regulates abscisic acid-responsive gene expression with the nuclear factor Y complex through the ACTT-core element inPhyscomitrella patens

(2013) Izumi Yotsui et al.   NEW PHYTOLOGIST

Plant Callus: Mechanisms of Induction and Repression

(2013) M. Ikeuchi et al.   PLANT CELL

The Cotton Transcription Factor TCP14 Functions in Auxin-Mediated Epidermal Cell Differentiation and Elongation

(2013) M.-Y. Wang et al.   PLANT PHYSIOLOGY

Totipotency: What It Is and What It Is Not

(2013) Maureen L. Condic   STEM CELLS AND DEVELOPMENT

Analysis of the role of Arabidopsis class I TCP genes AtTCP7, AtTCP8, AtTCP22, and AtTCP23 in leaf development

(2013) José A. Aguilar-Martínez et al.   Frontiers in Plant Science

Ectopic overexpression of castor bean LEAFY COTYLEDON2 (LEC2) in Arabidopsis triggers the expression of genes that encode regulators of seed maturation and oil body proteins in vegetative tissues

(2013) Hyun Uk Kim et al.   FEBS Open Bio

Transgenic Arabidopsis thaliana expressing a barley UDP-glucosyltransferase exhibit resistance to the mycotoxin deoxynivalenol

(2012) Sanghyun Shin et al.   JOURNAL OF EXPERIMENTAL BOTANY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Method of the Year 2011

(2011)   NATURE METHODS

Efficient sweet pepper transformation mediated by the BABY BOOM transcription factor

(2011) Iris Heidmann et al.   PLANT CELL REPORTS

Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data

(2010) Sinara Artico et al.   BMC PLANT BIOLOGY

Regulation of Somatic Embryogenesis in Higher Plants

(2010) Xiyan Yang et al.   CRITICAL REVIEWS IN PLANT SCIENCES

The GATA Factor HANABA TARANU Is Required to Position the Proembryo Boundary in the Early Arabidopsis Embryo

(2010) Tal Nawy et al.   DEVELOPMENTAL CELL

Cytokinin and auxin regulates WUS induction and inflorescence regeneration in vitro in Arabidopsis

(2010) Zhi Juan Cheng et al.   PLANT CELL REPORTS

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Role of phytohormones and nitrogen in somatic embryogenesis induction in cell culture derived from leaflets of Azadirachta indica

(2009) G. S. Shekhawat et al.   BIOLOGIA PLANTARUM

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

RNA Extraction from Various Recalcitrant Plant Tissues with a Cethyltrimethylammonium Bromide-Containing Buffer Followed by an Acid Guanidium Thiocyanate-Phenol-Chloroform Treatment

(2008) Yuji SUZUKI et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Effect of exogenous ABA on somatic embryo maturation and germination in Persian walnut (Juglans regia L.)

(2008) Kourosh Vahdati et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Both the conserved GRAS domain and nuclear localization are required for SHORT-ROOT movement

(2008) Kimberly L. Gallagher et al.   PLANT JOURNAL

BREVIS RADIX is involved in cytokinin-mediated inhibition of lateral root initiation in Arabidopsis

(2008) Jing Li et al.   PLANTA