In Silico Analysis of Small RNAs Suggest Roles for Novel and Conserved miRNAs in the Formation of Epigenetic Memory in Somatic Embryos of Norway Spruce

Transcriptional profiling of epigenetic regulators in somatic embryos during temperature induced formation of an epigenetic memory in Norway spruce

(2016) Igor A. Yakovlev et al.   PLANTA

Priming and memory of stress responses in organisms lacking a nervous system

(2015) Monika Hilker et al.   BIOLOGICAL REVIEWS

Identification and expression profiles of sRNAs and their biogenesis and action-related genes in male and female cones of Pinus tabuliformis

(2015) Shi-Hui Niu et al.   BMC GENOMICS

Boron-deficiency-responsive microRNAs and their targets in Citrus sinensis leaves

(2015) Yi-Bin Lu et al.   BMC PLANT BIOLOGY

The zinc-finger protein SPT4 interacts with SPT5L/KTF1 and modulates transcriptional silencing inArabidopsis

(2015) Karin Köllen et al.   FEBS LETTERS

Methylation of microRNA genes regulates gene expression in bisexual flower development in andromonoecious poplar

(2015) Yuepeng Song et al.   JOURNAL OF EXPERIMENTAL BOTANY

Specificity of plant microRNA target MIMICs: Cross-targeting of miR159 and miR319

(2015) Marlene Reichel et al.   JOURNAL OF PLANT PHYSIOLOGY

Regulation of the alkaloid biosynthesis by miRNA in opium poppy

(2015) Hatice Boke et al.   PLANT BIOTECHNOLOGY JOURNAL

Role of microRNAs in plant drought tolerance

(2015) Jannatul Ferdous et al.   PLANT BIOTECHNOLOGY JOURNAL

miR408is involved in abiotic stress responses in Arabidopsis

(2015) Chao Ma et al.   PLANT JOURNAL

Identification and characterization of microRNA expression in Ginkgo biloba L. leaves

(2015) Li Wang et al.   Tree Genetics & Genomes

Genetic and epigenetic control of plant heat responses

(2015) Junzhong Liu et al.   Frontiers in Plant Science

Role of microRNAs involved in plant response to nitrogen and phosphorous limiting conditions

(2015) Giao N. Nguyen et al.   Frontiers in Plant Science

The role of chromatin modifications in somatic embryogenesis in plants

(2015) Clelia De-la-Peña et al.   Frontiers in Plant Science

Biogenesis of trans-acting siRNAs, endogenous secondary siRNAs in plants

(2015) Manabu Yoshikawa   GENES & GENETIC SYSTEMS

Pentatricopeptide Repeat Proteins in Plants

(2014) Alice Barkan et al.   Annual Review of Plant Biology

Diversity, expression and mRNA targeting abilities of Argonaute-targeting miRNAs among selected vascular plants

(2014) Soham Jagtap et al.   BMC GENOMICS

Transgenerational Epigenetic Inheritance: Myths and Mechanisms

(2014) Edith Heard et al.   CELL

Epigenetic memory in plants

(2014) M. Iwasaki et al.   EMBO JOURNAL

Expression of microRNAs and their targets regulates floral development in tobacco (Nicotiana tabacum)

(2014) Caitlin E. Burklew et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

The rise of regulatory RNA

(2014) Kevin V. Morris et al.   NATURE REVIEWS GENETICS

Epigenetic Memory for Stress Response and Adaptation in Plants

(2014) Tetsu Kinoshita et al.   PLANT AND CELL PHYSIOLOGY

Insight into small RNA abundance and expression in high- and low-temperature stress response using deep sequencing in Arabidopsis

(2014) Vesselin Baev et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Analysis of miRNAs and Their Targets during Adventitious Shoot Organogenesis of Acacia crassicarpa

(2014) Weina Liu et al.   PLoS One

Temperature-dependent differential transcriptomes during formation of an epigenetic memory in Norway spruce embryogenesis

(2014) Igor A. Yakovlev et al.   Tree Genetics & Genomes

The functional scope of plant microRNA-mediated silencing

(2014) Junyan Li et al.   TRENDS IN PLANT SCIENCE

Epigenetic Regulation in Plants

(2014) C. S. Pikaard et al.   Cold Spring Harbor Perspectives in Biology

Epigenetic Regulation in Plant Responses to the Environment

(2014) D. C. Baulcombe et al.   Cold Spring Harbor Perspectives in Biology

Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs

(2014) Ricardo A. Chávez Montes et al.   Nature Communications

miR828 and miR858 regulate homoeologous MYB2 gene functions in Arabidopsis trichome and cotton fibre development

(2014) Xueying Guan et al.   Nature Communications

To be or not to be a piRNA: genomic origin and processing of piRNAs

(2014) Adrien Le Thomas et al.   GENOME BIOLOGY

Expression patterns of conserved microRNAs in the male gametophyte of loblolly pine (Pinus taeda)

(2014) Christina R. Quinn et al.   Plant Reproduction

Interplay of microRNA and epigenetic regulation in the human regulatory network

(2014) Matteo Osella et al.   Frontiers in Genetics

MicroRNAs and their putative targets in Brassica napus seed maturation

(2013) Daiqing Huang et al.   BMC GENOMICS

Transcriptomic analysis highlights epigenetic and transcriptional regulation during zygotic embryo development of Pinus pinaster

(2013) José J de Vega-Bartol et al.   BMC PLANT BIOLOGY

A Protodermal miR394 Signal Defines a Region of Stem Cell Competence in the Arabidopsis Shoot Meristem

(2013) Steffen Knauer et al.   DEVELOPMENTAL CELL

Phylogenetic analysis reveals conservation and diversification of micro RNA166 genes among diverse plant species

(2013) Suvakanta Barik et al.   GENOMICS

Plant MicroRNAs and Development

(2013) Gang Wu   Journal of Genetics and Genomics

miRNA–transcription factor interactions: a combinatorial regulation of gene expression

(2013) S. Arora et al.   MOLECULAR GENETICS AND GENOMICS

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

Diversifying microRNA sequence and function

(2013) Stefan L. Ameres et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Comparative Analysis Reveals Dynamic Changes in miRNAs and Their Targets and Expression during Somatic Embryogenesis in Longan (Dimocarpus longan Lour.)

(2013) Yuling Lin et al.   PLoS One

Small RNAs and heritable epigenetic variation in plants

(2013) Donna M. Bond et al.   TRENDS IN CELL BIOLOGY

Modulation of epigenetic regulators and cell fate decisions by miRNAs

(2013) Andreas J Gruber et al.   Epigenomics

Epigenetic regulation of adaptive responses of forest tree species to the environment

(2013) Katharina Bräutigam et al.   Ecology and Evolution

Transcriptome-wide identification and characterization of miRNAs from Pinus densata

(2012) Li-Chuan Wan et al.   BMC GENOMICS

Identification and characterization of small non-coding RNAs from Chinese fir by high throughput sequencing

(2012) Li-Chuan Wan et al.   BMC PLANT BIOLOGY

Local and systemic changes in expression of resistance genes, nb-lrr genes and their putative microRNAs in norway spruce after wounding and inoculation with the pathogen ceratocystis polonica

(2012) Carl Gunnar Fossdal et al.   BMC PLANT BIOLOGY

The Small RNA-Based Odyssey of Epigenetic Information in Plants: From Cells to Species

(2012) Marie Mirouze   DNA AND CELL BIOLOGY

PsRobot: a web-based plant small RNA meta-analysis toolbox

(2012) Hua-Jun Wu et al.   NUCLEIC ACIDS RESEARCH

A MicroRNA Superfamily Regulates Nucleotide Binding Site-Leucine-Rich Repeats and Other mRNAs

(2012) P. V. Shivaprasad et al.   PLANT CELL

Dynamic expression of small RNA populations in larch (Larix leptolepis)

(2012) Junhong Zhang et al.   PLANTA

Genome-wide identification of microRNAs in larch and stage-specific modulation of 11 conserved microRNAs and their targets during somatic embryogenesis

(2012) Junhong Zhang et al.   PLANTA

Epigenetic Regulation by Long Noncoding RNAs

(2012) J. T. Lee   SCIENCE

Ion channels/transporters as epigenetic regulators? —a microRNA perspective

(2012) XiaoHua Jiang et al.   Science China-Life Sciences

An adaptive epigenetic memory in conifers with important implications for seed production

(2012) Igor Yakovlev et al.   SEED SCIENCE RESEARCH

Structural and Functional Discussion of the Tetra-Trico-Peptide Repeat, a Protein Interaction Module

(2012) Natalie Zeytuni et al.   STRUCTURE

IsomiRs – the overlooked repertoire in the dynamic microRNAome

(2012) Corine T. Neilsen et al.   TRENDS IN GENETICS

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

Transgenerational epigenetic inheritance in plants

(2011) Marie-Theres Hauser et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

(2011) Basel Khraiwesh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing

(2011) Tianzuo Wang et al.   BMC GENOMICS

Clathrin-mediated endocytosis: the gateway into plant cells

(2011) Xu Chen et al.   CURRENT OPINION IN PLANT BIOLOGY

The role of the miR399-PHO2 module in the regulation of flowering time in response to different ambient temperatures in Arabidopsis thaliana

(2011) Wanhui Kim et al.   MOLECULES AND CELLS

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

MicroRNAs and their diverse functions in plants

(2011) Guiling Sun   PLANT MOLECULAR BIOLOGY

Sequencing-Based Approaches Reveal Low Ambient Temperature-Responsive and Tissue-Specific MicroRNAs in Phalaenopsis Orchid

(2011) Feng-Ming An et al.   PLoS One

Four abiotic stress-induced miRNA families differentially regulated in the embryogenic and non-embryogenic callus tissues of Larix leptolepis

(2010) Shougong Zhang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Small RNA-mediated epigenetic modifications in plants

(2010) Stacey A Simon et al.   CURRENT OPINION IN PLANT BIOLOGY

MicroRNAs and gene regulatory networks: managing the impact of noise in biological systems

(2010) H. Herranz et al.   GENES & DEVELOPMENT

MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce

(2010) Igor A. Yakovlev et al.   NEW PHYTOLOGIST

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Identification of grapevine microRNAs and their targets using high throughput sequencing and degradome analysis

(2010) Vitantonio Pantaleo et al.   PLANT JOURNAL

Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA

(2010) J. B. Heo et al.   SCIENCE

MicroRNAs with macro-effects on plant stress responses

(2010) Ramanjulu Sunkar   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera

(2009) Erica Mica et al.   BMC GENOMICS

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

Control of cell proliferation in Arabidopsis thaliana by microRNA miR396

(2009) R. E. Rodriguez et al.   DEVELOPMENT

Evidence for stage-specific modulation of specific microRNAs (miRNAs) and miRNA processing components in zygotic embryo and female gametophyte of loblolly pine (Pinus taeda)

(2008) Thomas J. Oh et al.   NEW PHYTOLOGIST

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL