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Title
The 3D Genome: From Structure to Function
Authors
Keywords
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Journal
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
Volume 22, Issue 21, Pages 11585
Publisher
MDPI AG
Online
2021-10-28
DOI
10.3390/ijms222111585
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- (2020) Marco Di Stefano et al. GENETICS
- Identifying statistically significant chromatin contacts from Hi-C data with FitHiC2
- (2020) Arya Kaul et al. Nature Protocols
- Physical and data structure of 3D genome
- (2020) Kai Huang et al. Science Advances
- Hi-C Identifies Complex Genomic Rearrangements and TAD-Shuffling in Developmental Diseases
- (2020) Uirá Souto Melo et al. AMERICAN JOURNAL OF HUMAN GENETICS
- A Lamin Associated Chromatin Model for Chromosome Organization
- (2020) Ajoy Maji et al. BIOPHYSICAL JOURNAL
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- (2020) Nils Krietenstein et al. MOLECULAR CELL
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- (2020) Mengfan Li et al. Science China-Life Sciences
- Loop extrusion: theory meets single-molecule experiments
- (2020) Edward J. Banigan et al. CURRENT OPINION IN CELL BIOLOGY
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- (2020) Simona Bianco et al. CURRENT OPINION IN CELL BIOLOGY
- De novo transcriptome assembly of cold stressed clones of the hexaploid Sequoia sempervirens (D. Don) Endl.
- (2020) Natalie Breidenbach et al. Scientific Data
- Predicting 3D genome folding from DNA sequence with Akita
- (2020) Geoff Fudenberg et al. NATURE METHODS
- Actin on and around the Nucleus
- (2020) Patricia M. Davidson et al. TRENDS IN CELL BIOLOGY
- Deciphering Hi-C: from 3D genome to function
- (2019) Siyuan Kong et al. CELL BIOLOGY AND TOXICOLOGY
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- (2019) Youngjo Kim et al. Nucleus
- Getting the drop on chromatin interaction
- (2019) Linda Koch NATURE REVIEWS GENETICS
- Multiplex chromatin interactions with single-molecule precision
- (2019) Meizhen Zheng et al. NATURE
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- (2019) Christiaan Q Eijsbouts et al. BMC GENOMICS
- A multiplexed DNA FISH strategy for assessing genome architecture in Caenorhabditis elegans
- (2019) Brandon D Fields et al. eLife
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- (2019) Quentin Szabo et al. Science Advances
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- (2019) Hui Zheng et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Mechanisms of Interplay between Transcription Factors and the 3D Genome
- (2019) Seungsoo Kim et al. MOLECULAR CELL
- Control of DNA replication timing in the 3D genome
- (2019) Claire Marchal et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Technologies to study spatial genome organization: beyond 3C
- (2019) Nadine Übelmesser et al. Briefings in Functional Genomics
- normGAM: an R package to remove systematic biases in genome architecture mapping data
- (2019) Tong Liu et al. BMC GENOMICS
- Methods for mapping 3D chromosome architecture
- (2019) Rieke Kempfer et al. NATURE REVIEWS GENETICS
- Contact Mapping to Unravel Chromosome Folding
- (2019) Tiffany Ge et al. TRENDS IN BIOCHEMICAL SCIENCES
- Gaussian Curvature Directs Stress Fiber Orientation and Cell Migration
- (2018) Nathan D. Bade et al. BIOPHYSICAL JOURNAL
- Formation of Chromatin Subcompartments by Phase Separation
- (2018) Fabian Erdel et al. BIOPHYSICAL JOURNAL
- Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus
- (2018) Sofia A. Quinodoz et al. CELL
- Forces driving the three‐dimensional folding of eukaryotic genomes
- (2018) Alvaro Rada‐Iglesias et al. Molecular Systems Biology
- Polymer physics predicts the effects of structural variants on chromatin architecture
- (2018) Simona Bianco et al. NATURE GENETICS
- Genome-Wide Analysis of the Arabidopsis Replication Timing Program
- (2018) Lorenzo Concia et al. PLANT PHYSIOLOGY
- OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes
- (2018) Brian J. Beliveau et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A pathway for mitotic chromosome formation
- (2018) Johan H. Gibcus et al. SCIENCE
- Computational methods for analyzing and modeling genome structure and organization
- (2018) Dejun Lin et al. Wiley Interdisciplinary Reviews-Systems Biology and Medicine
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- (2018) Fidel Ramírez et al. Nature Communications
- Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions
- (2018) Stefan Schoenfelder et al. Jove-Journal of Visualized Experiments
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- (2018) Artem V. Luzhin et al. JOURNAL OF CELLULAR BIOCHEMISTRY
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- (2018) Nicole Rusk NATURE METHODS
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- (2018) Guillaume Le Treut et al. BIOPHYSICAL JOURNAL
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- (2016) Alistair N. Boettiger et al. NATURE
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- (2016) Tapan Kumar Mohanta et al. Scientific Reports
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- (2014) Muna M ALmughamsi et al. BMC GENOMICS
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