Recent evidence that TADs and chromatin loops are dynamic structures
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Recent evidence that TADs and chromatin loops are dynamic structures
Authors
Keywords
-
Journal
Nucleus
Volume 9, Issue 1, Pages 20-32
Publisher
Informa UK Limited
Online
2017-10-28
DOI
10.1080/19491034.2017.1389365
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment
- (2017) Jonathan A. Beagan et al. GENOME RESEARCH
- Two independent modes of chromatin organization revealed by cohesin removal
- (2017) Wibke Schwarzer et al. NATURE
- Complex multi-enhancer contacts captured by genome architecture mapping
- (2017) Robert A. Beagrie et al. NATURE
- Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl
- (2017) Georg A. Busslinger et al. NATURE
- Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition
- (2017) Ilya M. Flyamer et al. NATURE
- 3D structures of individual mammalian genomes studied by single-cell Hi-C
- (2017) Tim J. Stevens et al. NATURE
- Cell-cycle dynamics of chromosomal organization at single-cell resolution
- (2017) Takashi Nagano et al. NATURE
- FISH-ing for captured contacts: towards reconciling FISH and 3C
- (2017) Geoffrey Fudenberg et al. NATURE METHODS
- Bacillus subtilis SMC complexes juxtapose chromosome arms as they travel from origin to terminus
- (2017) Xindan Wang et al. SCIENCE
- ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells
- (2017) Horng D. Ou et al. SCIENCE
- SMC Progressively Aligns Chromosomal Arms in Caulobacter crescentus but Is Antagonized by Convergent Transcription
- (2017) Ngat T. Tran et al. Cell Reports
- Scc2/Nipbl hops between chromosomal cohesin rings after loading
- (2017) James Rhodes et al. eLife
- CTCF and cohesin regulate chromatin loop stability with distinct dynamics
- (2017) Anders S Hansen et al. eLife
- Insulated Neighborhoods: Structural and Functional Units of Mammalian Gene Control
- (2016) Denes Hnisz et al. CELL
- The 3D Genome as Moderator of Chromosomal Communication
- (2016) Job Dekker et al. CELL
- Rapid movement and transcriptional re‐localization of human cohesin on DNA
- (2016) Iain F Davidson et al. EMBO JOURNAL
- Cohesin acetylation and Wapl‐Pds5 oppositely regulate translocation of cohesin along DNA
- (2016) Mai Kanke et al. EMBO JOURNAL
- CTCF: making the right connections
- (2016) Rodolfo Ghirlando et al. GENES & DEVELOPMENT
- Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding
- (2016) Guillaume Andrey et al. GENOME RESEARCH
- Exploiting native forces to capture chromosome conformation in mammalian cell nuclei
- (2016) Lilija Brant et al. Molecular Systems Biology
- Deletion ofDXZ4on the human inactive X chromosome alters higher-order genome architecture
- (2016) Emily M. Darrow et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The detailed 3D multi-loop aggregate/rosette chromatin architecture and functional dynamic organization of the human and mouse genomes
- (2016) Tobias A. Knoch et al. Epigenetics & Chromatin
- Single-Molecule Imaging Reveals a Collapsed Conformational State for DNA-Bound Cohesin
- (2016) Johannes Stigler et al. Cell Reports
- Formation of Chromosomal Domains by Loop Extrusion
- (2016) Geoffrey Fudenberg et al. Cell Reports
- Of Rings and Rods: Regulating Cohesin Entrapment of DNA to Generate Intra- and Intermolecular Tethers
- (2016) Robert V. Skibbens PLoS Genetics
- Synthesis of a Far-Red Photoactivatable Silicon-Containing Rhodamine for Super-Resolution Microscopy
- (2015) Jonathan B. Grimm et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
- (2015) Zhonghui Tang et al. CELL
- Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
- (2015) Darío G. Lupiáñez et al. CELL
- CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function
- (2015) Ya Guo et al. CELL
- The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
- (2015) Stefan Schoenfelder et al. GENOME RESEARCH
- CTCF Binding Polarity Determines Chromatin Looping
- (2015) Elzo de Wit et al. MOLECULAR CELL
- Insulator dysfunction and oncogene activation in IDH mutant gliomas
- (2015) William A. Flavahan et al. NATURE
- Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C
- (2015) Borbala Mifsud et al. NATURE GENETICS
- A general method to improve fluorophores for live-cell and single-molecule microscopy
- (2015) Jonathan B Grimm et al. NATURE METHODS
- Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
- (2015) Adrian L. Sanborn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- CTCF establishes discrete functional chromatin domains at theHoxclusters during differentiation
- (2015) Varun Narendra et al. SCIENCE
- Comparative Hi-C Reveals that CTCF Underlies Evolution of Chromosomal Domain Architecture
- (2015) Matteo Vietri Rudan et al. Cell Reports
- Predictive Polymer Modeling Reveals Coupled Fluctuations in Chromosome Conformation and Transcription
- (2014) Luca Giorgetti et al. CELL
- Enhancer Interaction Networks as a Means for Singular Olfactory Receptor Expression
- (2014) Eirene Markenscoff-Papadimitriou et al. CELL
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- CTCF regulates the human p53 gene through direct interaction with its natural antisense transcript, Wrap53
- (2014) R. Saldana-Meyer et al. GENES & DEVELOPMENT
- Functional and topological characteristics of mammalian regulatory domains
- (2014) O. Symmons et al. GENOME RESEARCH
- Topologically associating domains are stable units of replication-timing regulation
- (2014) Benjamin D. Pope et al. NATURE
- Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment
- (2014) Jim R Hughes et al. NATURE GENETICS
- Chromatin Loops as Allosteric Modulators of Enhancer-Promoter Interactions
- (2014) Boryana Doyle et al. PLoS Computational Biology
- Models that include supercoiling of topological domains reproduce several known features of interphase chromosomes
- (2013) Fabrizio Benedetti et al. NUCLEIC ACIDS RESEARCH
- Organization of the Mitotic Chromosome
- (2013) N. Naumova et al. SCIENCE
- Controlling Long-Range Genomic Interactions at a Native Locus by Targeted Tethering of a Looping Factor
- (2012) Wulan Deng et al. CELL
- Nuclear Aggregation of Olfactory Receptor Genes Governs Their Monogenic Expression
- (2012) E. Josephine Clowney et al. CELL
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Spatial partitioning of the regulatory landscape of the X-inactivation centre
- (2012) Elphège P. Nora et al. NATURE
- A benchmark for chromatin binding measurements in live cells
- (2012) Davide Mazza et al. NUCLEIC ACIDS RESEARCH
- Self-organization of domain structures by DNA-loop-extruding enzymes
- (2012) E. Alipour et al. NUCLEIC ACIDS RESEARCH
- The CTCF insulator protein forms an unusual DNA structure
- (2011) Melissa J MacPherson et al. BMC MOLECULAR BIOLOGY
- Specific Sites in the C Terminus of CTCF Interact with the SA2 Subunit of the Cohesin Complex and Are Required for Cohesin-Dependent Insulation Activity
- (2011) T. Xiao et al. MOLECULAR AND CELLULAR BIOLOGY
- The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules
- (2010) Davide Baù et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- CTCF terminal segments are unstructured
- (2010) Selena R. Martinez et al. PROTEIN SCIENCE
- Chromosome Territories
- (2010) T. Cremer et al. Cold Spring Harbor Perspectives in Biology
- The molecular clockwork of a protein-based circadian oscillator
- (2009) Joseph S. Markson et al. FEBS LETTERS
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started