Draft genome of the blister beetle, Epicauta chinensis

Biogenetic cantharidin is a promising leading compound to manage insecticide resistance of Mythimna separata (Lepidoptera: Noctuidae)

(2021) Yifan Li et al.   PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY

Twelve years of SAMtools and BCFtools

(2021) Petr Danecek et al.   GigaScience

Draft Genome of a Blister Beetle Mylabris aulica

(2020) De-Long Guan et al.   Frontiers in Genetics

Chromosome‐level assembly of the melon thrips genome yields insights into evolution of a sap‐sucking lifestyle and pesticide resistance

(2020) Shao‐Kun Guo et al.   Molecular Ecology Resources

RepeatModeler2 for automated genomic discovery of transposable element families

(2020) Jullien M. Flynn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

bitacora : A comprehensive tool for the identification and annotation of gene families in genome assemblies

(2020) Joel Vizueta et al.   Molecular Ecology Resources

Anticancer Attributes of Cantharidin: Involved Molecular Mechanisms and Pathways

(2020) Faiza Naz et al.   MOLECULES

Assembly of long, error-prone reads using repeat graphs

(2019) Mikhail Kolmogorov et al.   NATURE BIOTECHNOLOGY

Genomic landscape and genetic manipulation of the black soldier fly Hermetia illucens, a natural waste recycler

(2019) Shuai Zhan et al.   CELL RESEARCH

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

Beetle genomes in the 21st century: prospects, progress and priorities

(2018) Duane D McKenna   Current Opinion in Insect Science

Draft genomes of two blister beetles Hycleus cichorii and Hycleus phaleratus

(2018) Yuan-Ming Wu et al.   GigaScience

Characterized cantharidin distribution and related gene expression patterns in tissues of blister beetles, Epicauta chinensis

(2017) Ming Jiang et al.   Insect Science

Comparative analysis of the Monochamus alternatus immune system

(2017) Jiao Zhou et al.   Insect Science

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

(2017) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

(2017) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gene3D: Extensive prediction of globular domains in proteins

(2017) Tony E Lewis et al.   NUCLEIC ACIDS RESEARCH

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families

(2017) Ioanna Kalvari et al.   NUCLEIC ACIDS RESEARCH

Characterization of Juvenile Hormone Related Genes Regulating Cantharidin Biosynthesis in Epicauta chinensis

(2017) Ming Jiang et al.   Scientific Reports

Pheromone biosynthesis in bark beetles

(2017) Claus Tittiger et al.   Current Opinion in Insect Science

Survey of Global Genetic Diversity Within the Drosophila Immune System

(2016) Angela M. Early et al.   GENETICS

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

(2016) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Redundans: an assembly pipeline for highly heterozygous genomes

(2016) Leszek P. Pryszcz et al.   NUCLEIC ACIDS RESEARCH

InterPro in 2017—beyond protein family and domain annotations

(2016) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements

(2016) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Survey of Global Genetic Diversity Within the Drosophila Immune System

(2016) Angela M. Early et al.   GENETICS

Sambamba: fast processing of NGS alignment formats

(2015) Artem Tarasov et al.   BIOINFORMATICS

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS: Table 1.

(2015) Katharina J. Hoff et al.   BIOINFORMATICS

3-hydroxy-3-methyl glutaryl coenzyme A reductase: an essential actor in the biosynthesis of cantharidin in the blister beetleEpicauta chinensisLaporte

(2015) S. Lü et al.   INSECT MOLECULAR BIOLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

High speed BLASTN: an accelerated MegaBLAST search tool

(2015) Ying Chen et al.   NUCLEIC ACIDS RESEARCH

The Dfam database of repetitive DNA families

(2015) Robert Hubley et al.   NUCLEIC ACIDS RESEARCH

The beetle tree of life reveals that Coleoptera survived end-Permian mass extinction to diversify during the Cretaceous terrestrial revolution

(2015) DUANE D. MCKENNA et al.   SYSTEMATIC ENTOMOLOGY

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

Beetle juice: a guide for the use of cantharidin in the treatment of molluscum contagiosum

(2013) Virginia Moye et al.   Dermatologic Therapy

Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3

(2013) Mira V. Han et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gut homeostasis in a microbial world: insights from Drosophila melanogaster

(2013) Nicolas Buchon et al.   NATURE REVIEWS MICROBIOLOGY

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest

(2013) Christopher I Keeling et al.   GENOME BIOLOGY

Recent Studies on Insect Hormone Metabolic Pathways Mediated by Cytochrome P450 Enzymes

(2012) Masatoshi Iga et al.   BIOLOGICAL & PHARMACEUTICAL BULLETIN

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

A Cytochrome P450 Conserved in Insects Is Involved in Cuticle Formation

(2012) Tamar Sztal et al.   PLoS One

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

(2010) Alexis Criscuolo et al.   BMC EVOLUTIONARY BIOLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Identification of novel genes involved in light-dependent CRY degradation through a genome-wide RNAi screen

(2008) S. Sathyanarayanan et al.   GENES & DEVELOPMENT

On the scent of speciation: the chemosensory system and its role in premating isolation

(2008) C Smadja et al.   HEREDITY

A genome-wide analysis of genes and gene families involved in innate immunity of Bombyx mori

(2008) Hiromitsu Tanaka et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

SUPERFAMILY—sophisticated comparative genomics, data mining, visualization and phylogeny

(2008) Derek Wilson et al.   NUCLEIC ACIDS RESEARCH