Long-term conversion from rice-wheat to rice-vegetable rotations drives variation in soil microbial communities and shifts in nitrogen-cycling through soil profiles

Depth‐dependent soil organic carbon dynamics of croplands across the Chengdu Plain of China from the 1980s to the 2010s

(2020) Qiquan Li et al.   GLOBAL CHANGE BIOLOGY

Dramatic loss of inorganic carbon by nitrogen‐induced soil acidification in Chinese croplands

(2020) Sajjad Raza et al.   GLOBAL CHANGE BIOLOGY

Assessing the impact of long-term soil phosphorus on N-transformation pathways using 15N tracing

(2020) R.M. O'Neill et al.   SOIL BIOLOGY & BIOCHEMISTRY

Application of a triple 15N tracing technique to elucidate N transformations in a UK grassland soil

(2020) Nadine Loick et al.   GEODERMA

Coupling metabolisms of arsenic and iron with humic substances through microorganisms in paddy soil

(2019) Xing-Yun Yi et al.   JOURNAL OF HAZARDOUS MATERIALS

Effects of agricultural land use change on organic carbon and its labile fractions in the soil profile in an urban agricultural area

(2019) Youlin Luo et al.   LAND DEGRADATION & DEVELOPMENT

Response and driving factors of soil microbial diversity related to global nitrogen addition

(2019) Yang Yang et al.   LAND DEGRADATION & DEVELOPMENT

Forest-to-agriculture conversion in Amazon drives soil microbial communities and N-cycle

(2019) Luis Fernando Merloti et al.   SOIL BIOLOGY & BIOCHEMISTRY

Comammox Nitrospira play an active role in nitrification of agricultural soils amended with nitrogen fertilizers

(2019) Chaoyu Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Agricultural management and plant selection interactively affect rhizosphere microbial community structure and nitrogen cycling

(2019) Jennifer E. Schmidt et al.   Microbiome

Impacts of agricultural land use change on soil aggregate stability and physical protection of organic C

(2019) Lingke Guo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Ensuring food security with lower environmental costs under intensive agricultural land use patterns: A case study from China

(2018) Xiaoxing Qi et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

The microbial nitrogen-cycling network

(2018) Marcel M. M. Kuypers et al.   NATURE REVIEWS MICROBIOLOGY

Long-term and high-concentration heavy-metal contamination strongly influences the microbiome and functional genes in Yellow River sediments

(2018) Yong Chen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Decreasing soil microbial diversity is associated with decreasing microbial biomass under nitrogen addition

(2018) Chao Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Relative abundance of denitrifying and DNRA bacteria and their activity determine nitrogen retention or loss in agricultural soil

(2018) Martina Putz et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bacterial metataxonomic profile and putative functional behavior associated with C and N cycle processes remain altered for decades after forest harvest

(2018) Ryan M. Mushinski et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil microbiomes with distinct assemblies through vertical soil profiles drive the cycling of multiple nutrients in reforested ecosystems

(2018) Shuo Jiao et al.   Microbiome

Ammonia-oxidising archaea living at low pH: Insights from comparative genomics

(2017) Craig W. Herbold et al.   ENVIRONMENTAL MICROBIOLOGY

Conversion from rice to vegetable production increases N 2 O emission via increased soil organic matter mineralization

(2017) Lei Wu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Effect of agricultural management on N 2 O emissions in the Brazilian sugarcane yield

(2017) Felipe J.C. Fracetto et al.   SOIL BIOLOGY & BIOCHEMISTRY

Agricultural land use determines functional genetic diversity of soil microbial communities

(2017) Lokeshwaran Manoharan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Ecological niche differentiation of ammonia-oxidising archaea and bacteria in acidic soils due to land use change

(2017) Shenyan Dai et al.   Soil Research

Changes in microbial community during biohydrogen production using gamma irradiated sludge as inoculum

(2016) Yanan Yin et al.   BIORESOURCE TECHNOLOGY

The nitrogen cycle

(2016) Lisa Y. Stein et al.   CURRENT BIOLOGY

Land use intensification in the humid tropics increased both alpha and beta diversity of soil bacteria

(2016) Teotonio Soares de Carvalho et al.   ECOLOGY

Effect of biochar additions to soil on nitrogen leaching, microbial biomass and bacterial community structure

(2016) Nan Xu et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Soil organic matter content controls gross nitrogen dynamics and N2O production in riparian and upland boreal soil

(2016) V. Figueiredo et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Change from paddy rice to vegetable growing changes nitrogen-cycling microbial communities and their variation with depth in the soil

(2016) H. L. Qin et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Soil nitrate accumulation and leaching to groundwater during the entire vegetable phase following conversion from paddy rice

(2016) Ying Wang et al.   NUTRIENT CYCLING IN AGROECOSYSTEMS

Nitrogen fertilization induced changes in ammonia oxidation are attributable mostly to bacteria rather than archaea in greenhouse-based high N input vegetable soil

(2016) Wenhui Zhong et al.   SOIL BIOLOGY & BIOCHEMISTRY

Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies

(2016) Davide Francioli et al.   Frontiers in Microbiology

A global analysis of soil acidification caused by nitrogen addition

(2015) Dashuan Tian et al.   Environmental Research Letters

Greenhouse gas emissions and global warming potential of traditional and diversified tropical rice rotation systems

(2015) Sebastian Weller et al.   GLOBAL CHANGE BIOLOGY

Effects of nitrogen enrichment on belowground communities in grassland: Relative role of soil nitrogen availability vs. soil acidification

(2015) Dima Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Intensive agriculture reduces soil biodiversity across Europe

(2014) Maria A. Tsiafouli et al.   GLOBAL CHANGE BIOLOGY

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Reactive nitrogen requirements to feed the world in 2050 and potential to mitigate nitrogen pollution

(2014) Benjamin Leon Bodirsky et al.   Nature Communications

Characterization of denitrifying activity by the alphaproteobacterium, Sphingomonas wittichii RW1

(2014) Lynnie S. Cua et al.   Frontiers in Microbiology

Evidence that acidification-induced declines in plant diversity and productivity are mediated by changes in below-ground communities and soil properties in a semi-arid steppe

(2013) Dima Chen et al.   JOURNAL OF ECOLOGY

Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage

(2013) Mohamed F. Haroon et al.   NATURE

Agricultural land use affects nitrate production and conservation in humid subtropical soils in China

(2013) Jinbo Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Temporal variation of soil friedelin and microbial community under different land uses in a long-term agroecosystem

(2013) Hong-Yun Dong et al.   SOIL BIOLOGY & BIOCHEMISTRY

Reinstating soil microbial diversity in agroecosystems: The need of the hour for sustainability and health

(2012) G. Seneviratne et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

A comparative transcriptomic, fluxomic and metabolomic analysis of the response of Saccharomyces cerevisiae to increases in NADPH oxidation

(2012) Magalie Celton et al.   BMC GENOMICS

Annual emissions of nitrous oxide and nitric oxide from rice-wheat rotation and vegetable fields: a case study in the Tai-Lake region, China

(2012) Jia Deng et al.   PLANT AND SOIL

Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities

(2012) J. L. M. Rodrigues et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil microbial community dynamics over a maize (Zea mays L.) growing season under conventional- and no-tillage practices in a rainfed agroecosystem

(2012) Bin Zhang et al.   SOIL & TILLAGE RESEARCH

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

Exploration of community traits as ecological markers in microbial metagenomes

(2011) ALBERT BARBERÁN et al.   MOLECULAR ECOLOGY

Reconciling Food Production and Biodiversity Conservation: Land Sharing and Land Sparing Compared

(2011) B. Phalan et al.   SCIENCE

Denitrification is a common feature among members of the genus Bacillus

(2011) Ines Verbaendert et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Horizon-Specific Bacterial Community Composition of German Grassland Soils, as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

(2010) C. Will et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Navigating the multiple meanings of β diversity: a roadmap for the practicing ecologist

(2010) Marti J. Anderson et al.   ECOLOGY LETTERS

Denitrification at pH 4 by a soil-derived Rhodanobacter-dominated community

(2010) R. N. Van Den Heuvel et al.   ENVIRONMENTAL MICROBIOLOGY

Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments

(2010) Kai Zhuang et al.   ISME Journal

Significant Acidification in Major Chinese Croplands

(2010) J. H. Guo et al.   SCIENCE

Changes in soil carbon and nitrogen pools after shifting from conventional cereal to greenhouse vegetable production

(2010) S.J. Qiu et al.   SOIL & TILLAGE RESEARCH

The abundance of nitrogen cycle genes amoA and nifH depends on land-uses and soil types in South-Eastern Australia

(2010) Helen L. Hayden et al.   SOIL BIOLOGY & BIOCHEMISTRY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Acidification processes and soil leaching influenced by agricultural practices revealed by strontium isotopic ratios

(2009) Anne-Catherine Pierson-Wickmann et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Environmental and spatial characterisation of bacterial community composition in soil to inform sampling strategies

(2009) Kate L. Baker et al.   SOIL BIOLOGY & BIOCHEMISTRY