Land use intensification in the humid tropics increased both alpha and beta diversity of soil bacteria

How pervasive is biotic homogenization in human-modified tropical forest landscapes?

(2015) Ricardo Ribeiro de Castro Solar et al.   ECOLOGY LETTERS

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Soil-Borne Microbiome: Linking Diversity to Function

(2015) Lucas W. Mendes et al.   MICROBIAL ECOLOGY

Tropical Forests in the Anthropocene

(2014) Yadvinder Malhi et al.   Annual Review of Environment and Resources

Plant diversity predicts beta but not alpha diversity of soil microbes across grasslands worldwide

(2014) Suzanne M. Prober et al.   ECOLOGY LETTERS

A large-scale field assessment of carbon stocks in human-modified tropical forests

(2014) Erika Berenguer et al.   GLOBAL CHANGE BIOLOGY

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis

(2014) Andrew D Fernandes et al.   Microbiome

Impact of Logging and Forest Conversion to Oil Palm Plantations on Soil Bacterial Communities in Borneo

(2013) Larisa Lee-Cruz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studies

(2013) Anne Chao et al.   ECOLOGICAL MONOGRAPHS

Beta diversity as the variance of community data: dissimilarity coefficients and partitioning

(2013) Pierre Legendre et al.   ECOLOGY LETTERS

Plant β-diversity in fragmented rain forests: testing floristic homogenization and differentiation hypotheses

(2013) Víctor Arroyo-Rodríguez et al.   JOURNAL OF ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

A social and ecological assessment of tropical land uses at multiple scales: the Sustainable Amazon Network

(2013) T. A. Gardner et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Plant soil interactions alter carbon cycling in an upland grassland soil

(2013) Bruce C. Thomson et al.   Frontiers in Microbiology

Evaluation and optimization of nucleic acid extraction methods for the molecular analysis of bacterial communities associated with corroded carbon steel

(2012) Florence Marty et al.   BIOFOULING

Acidobacterial community responses to agricultural management of soybean in Amazon forest soils

(2012) Acácio A. Navarrete et al.   FEMS MICROBIOLOGY ECOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Tropical Soil Bacterial Communities in Malaysia: pH Dominates in the Equatorial Tropics Too

(2012) Binu M. Tripathi et al.   MICROBIAL ECOLOGY

Extensive Management Promotes Plant and Microbial Nitrogen Retention in Temperate Grassland

(2012) Franciska T. de Vries et al.   PLoS One

Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities

(2012) J. L. M. Rodrigues et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SOIL ATTRIBUTES AFTER THE CONVERSION FROM FOREST TO PASTURE IN AMAZON

(2011) A. M. de Souza Braz et al.   LAND DEGRADATION & DEVELOPMENT

Primary forests are irreplaceable for sustaining tropical biodiversity

(2011) Luke Gibson et al.   NATURE

Soil microbial response to wood ash or lime applied to annual crops and perennial grass in an acid soil of northwestern Alberta

(2010) N Z Lupwayi et al.   CANADIAN JOURNAL OF SOIL SCIENCE

Scale dependency of processes structuring metacommunities of cladocerans in temporary pools of High-Andes wetlands

(2010) Steven A. J. Declerck et al.   ECOGRAPHY

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Belowground carbon allocation by trees drives seasonal patterns of extracellular enzyme activities by altering microbial community composition in a beech forest soil

(2010) Christina Kaiser et al.   NEW PHYTOLOGIST

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Contrasting Soil pH Effects on Fungal and Bacterial Growth Suggest Functional Redundancy in Carbon Mineralization

(2009) J. Rousk et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

(2009) Ryan T Jones et al.   ISME Journal

Changes in land use alter the structure of bacterial communities in Western Amazon soils

(2009) Ederson da C Jesus et al.   ISME Journal

Vegetation Affects the Relative Abundances of Dominant Soil Bacterial Taxa and Soil Respiration Rates in an Upland Grassland Soil

(2009) Bruce C. Thomson et al.   MICROBIAL ECOLOGY

Differentiation in the fertility of Inceptisols as related to land use in the upper Solimões river region, western Amazon

(2009) Fatima Maria de Souza Moreira et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Microbial communities and their relevance for ecosystem models: Decomposition as a case study

(2009) Krista L. McGuire et al.   SOIL BIOLOGY & BIOCHEMISTRY

FORWARD SELECTION OF EXPLANATORY VARIABLES

(2008) F. Guillaume Blanchet et al.   ECOLOGY

Fire-mediated dieback and compositional cascade in an Amazonian forest

(2008) J. Barlow et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES