Population genomics analyses of European ibex species show lower diversity and higher inbreeding in reintroduced populations

Space use of a reintroduced population of Iberian ibex (Capra pyrenaica) in a protected natural area

(2016) P. Refoyo et al.   CANADIAN JOURNAL OF ZOOLOGY

Genomics advances the study of inbreeding depression in the wild

(2016) Marty Kardos et al.   Evolutionary Applications

Inbreeding depression across the lifespan in a wild mammal population

(2016) Jisca Huisman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Measuring individual inbreeding in the age of genomics: marker-based measures are better than pedigrees

(2015) M Kardos et al.   HEREDITY

The Accumulation of Deleterious Mutations as a Consequence of Domestication and Improvement in Sunflowers and Other Compositae Crops

(2015) Sebastien Renaut et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs

(2015) Clare D. Marsden et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding

(2015) Y. Xue et al.   SCIENCE

Genomics and the challenging translation into conservation practice

(2015) Aaron B.A. Shafer et al.   TRENDS IN ECOLOGY & EVOLUTION

Population and genetic outcomes 20 years after reintroducing bobcats (Lynx rufus) to Cumberland Island, Georgia USA

(2015) Duane Diefenbach et al.   Ecology and Evolution

Reintroduction of the European Capercaillie from the Capercaillie Breeding Centre in Wisła Forest District: Genetic Assessments of Captive and Reintroduced Populations

(2015) Tomasz Strzała et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Genetics in conservation management: Revised recommendations for the 50/500 rules, Red List criteria and population viability analyses

(2014) Richard Frankham et al.   BIOLOGICAL CONSERVATION

High-throughput sequencing reveals inbreeding depression in a natural population

(2014) J. I. Hoffman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Direct and indirect causal effects of heterozygosity on fitness-related traits in Alpine ibex

(2014) A. Brambilla et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Introgression from Domestic Goat Generated Variation at the Major Histocompatibility Complex of Alpine Ibex

(2014) Christine Grossen et al.   PLoS Genetics

NeEstimatorv2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data

(2013) C. Do et al.   Molecular Ecology Resources

Genomic Patterns of Homozygosity in Worldwide Human Populations

(2012) Trevor J. Pemberton et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Genetic variation depends more on admixture than number of founders in reintroduced Alpine ibex populations

(2012) Iris Biebach et al.   BIOLOGICAL CONSERVATION

Runs of homozygosity and population history in cattle

(2012) Deirdre C Purfield et al.   BMC GENETICS

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)

(2012) Yang Dong et al.   NATURE BIOTECHNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Preserving genetic diversity in threatened species reintroductions: how many individuals should be released?

(2011) L. N. Tracy et al.   ANIMAL CONSERVATION

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Inbreeding depression in red deer calves

(2011) Craig A Walling et al.   BMC EVOLUTIONARY BIOLOGY

Microsatellite-based genotyping of MHC class II DRB1 gene in Iberian and Alpine ibex

(2011) Samer Alasaad et al.   EUROPEAN JOURNAL OF WILDLIFE RESEARCH

Quantification of Inbreeding Due to Distant Ancestors and Its Detection Using Dense Single Nucleotide Polymorphism Data

(2011) Matthew C. Keller et al.   GENETICS

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Sunflower domestication alleles support single domestication center in eastern North America

(2011) B. K. Blackman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Founder Effects, Inbreeding, and Loss of Genetic Diversity in Four Avian Reintroduction Programs

(2010) IAN G. JAMIESON   CONSERVATION BIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Inbreeding in reintroduced populations: the effects of early reintroduction history and contemporary processes

(2009) Iris Biebach et al.   CONSERVATION GENETICS

A strong genetic footprint of the re-introduction history of Alpine ibex (Capra ibex ibex)

(2009) IRIS BIEBACH et al.   MOLECULAR ECOLOGY

Runs of Homozygosity in European Populations

(2008) Ruth McQuillan et al.   AMERICAN JOURNAL OF HUMAN GENETICS

ldne: a program for estimating effective population size from data on linkage disequilibrium

(2008) ROBIN S. WAPLES et al.   Molecular Ecology Resources

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

Directions in reintroduction biology

(2007) D ARMSTRONG et al.   TRENDS IN ECOLOGY & EVOLUTION