Conventional and conservation tillage practices affect soil microbial co-occurrence patterns and are associated with crop yields

Global meta-analyses show that conservation tillage practices promote soil fungal and bacterial biomass

(2020) Huaihai Chen et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Native mycorrhizal communities of olive tree roots as affected by protective green cover and soil tillage

(2020) Michela Palla et al.   APPLIED SOIL ECOLOGY

Significant effects on soil microbial communities were not detected after strategic tillage following 44 years of conventional or no-tillage management

(2020) Vivian A. Rincon-Florez et al.   PEDOBIOLOGIA

Reduced co-occurrence and ion-specific preferences of soil microbial hub species after ten years of irrigation with brackish water

(2020) Yaxian Hu et al.   SOIL & TILLAGE RESEARCH

Mulching practices alter the bacterial-fungal community and network in favor of soil quality in a semiarid orchard system

(2020) Yuanji Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Phytobeneficial bacteria improve saline stress tolerance in Vicia faba and modulate microbial interaction network

(2020) Loubna Benidire et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Abundance of kinless hubs within soil microbial networks are associated with high functional potential in agricultural ecosystems

(2020) Yu Shi et al.   ENVIRONMENT INTERNATIONAL

Environmental filtering drives distinct continental atlases of soil archaea between dryland and wetland agricultural ecosystems

(2019) Shuo Jiao et al.   Microbiome

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Multi-omics analysis reveals niche and fitness differences in typical denitrification microbial aggregations

(2019) Yale Deng et al.   ENVIRONMENT INTERNATIONAL

Bacterial and fungal diversity in rhizosphere and bulk soil under different long-term tillage and cereal/legume rotation

(2019) Eunice Essel et al.   SOIL & TILLAGE RESEARCH

Reduced-tillage management enhances soil properties and crop yields in a alfalfa-corn rotation: Case study of the Songnen Plain, China

(2019) Jishan Chen et al.   Scientific Reports

Long-term no-tillage and different residue amounts alter soil microbial community composition and increase the risk of maize root rot in northeast China

(2019) Huanhuan Wang et al.   SOIL & TILLAGE RESEARCH

The stage of soil development modulates rhizosphere effect along a High Arctic desert chronosequence

(2018) Francesca Mapelli et al.   ISME Journal

Liming does not counteract the influence of long-term fertilization on soil bacterial community structure and its co-occurrence pattern

(2018) Bin Ma et al.   SOIL BIOLOGY & BIOCHEMISTRY

Co-occurrence patterns of soybean rhizosphere microbiome at a continental scale

(2018) Baogang Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Cover cropping and no-till increase diversity and symbiotroph:saprotroph ratios of soil fungal communities

(2018) Radomir Schmidt et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant cultivars imprint the rhizosphere bacterial community composition and association networks

(2017) Yuji Jiang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Changes in soil microbial community, enzyme activities and organic matter fractions under long-term straw return in north-central China

(2016) Shicheng Zhao et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Plant Diseases and Management Approaches in Organic Farming Systems

(2016) A.H.C. van Bruggen et al.   Annual Review of Phytopathology

Soil microbial community and microbial residues respond positively to minimum tillage under organic farming in Southern Germany

(2016) Hanyin Sun et al.   APPLIED SOIL ECOLOGY

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Temporal dynamics of fungal communities in soybean rhizosphere

(2016) Li-Li Han et al.   JOURNAL OF SOILS AND SEDIMENTS

Meta-analysis approach to assess effect of tillage on microbial biomass and enzyme activities

(2016) Stacy M. Zuber et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Soil Health Paradigms and Implications for Disease Management

(2015) Robert P. Larkin   Annual Review of Phytopathology

Strategic tillage in no-till farming systems in Australia’s northern grains-growing regions: I. Drivers and implementation

(2015) Y.P. Dang et al.   SOIL & TILLAGE RESEARCH

Impact of conservation tillage and organic farming on the diversity of arbuscular mycorrhizal fungi

(2015) Verena Säle et al.   SOIL BIOLOGY & BIOCHEMISTRY

Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health

(2015) Zhong Wei et al.   Nature Communications

Productivity limits and potentials of the principles of conservation agriculture

(2014) Cameron M. Pittelkow et al.   NATURE

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences

(2014) Pablo Yarza et al.   NATURE REVIEWS MICROBIOLOGY

Effects of tillage and biomass on soil quality and productivity of lowland rice cultivation by small scale farmers in North Eastern India

(2014) Anup Das et al.   SOIL & TILLAGE RESEARCH

Reverse-transcriptional gene expression of anammox and ammonia-oxidizing archaea and bacteria in soybean and rice paddy soils of Northeast China

(2013) Jing Wang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Plant: soil interactions in temperate multi-cropping production systems

(2013) Jürgen Ehrmann et al.   PLANT AND SOIL

Diversity, Physiology, and Niche Differentiation of Ammonia-Oxidizing Archaea

(2012) Roland Hatzenpichler   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cross-Site Soil Microbial Communities under Tillage Regimes: Fungistasis and Microbial Biomarkers

(2012) Timo P. Sipilä et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

First Report of Clonostachys rosea Causing Root Rot of Soybean in the United States

(2012) J. C. Bienapfl et al.   PLANT DISEASE

Soil microbial community dynamics over a maize (Zea mays L.) growing season under conventional- and no-tillage practices in a rainfed agroecosystem

(2012) Bin Zhang et al.   SOIL & TILLAGE RESEARCH

Changes during winter in water-stable aggregation due to crop residue quality

(2012) C. Le Guillou et al.   SOIL USE AND MANAGEMENT

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Functional Molecular Ecological Networks

(2010) J. Zhou et al.   mBio

Effects of tillage on microbial populations associated to soil aggregation in dryland spring wheat system

(2009) TheCan Caesar-TonThat et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Action and reaction of host and pathogen during Fusarium head blight disease

(2009) Stephanie Walter et al.   NEW PHYTOLOGIST

Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment

(2008) J. F. Biddle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA