Integrating Spatial Transcriptomics and Single-Cell RNA-seq Reveals the Gene Expression Profling of the Human Embryonic Liver

Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas

(2020) Reuben Moncada et al.   NATURE BIOTECHNOLOGY

Comparative analysis of cell lineage differentiation during hepatogenesis in humans and mice at the single-cell transcriptome level

(2020) Xin Wang et al.   CELL RESEARCH

Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development

(2019) Mazène Hochane et al.   PLOS BIOLOGY

Decoding human fetal liver haematopoiesis

(2019) Dorin-Mirel Popescu et al.   NATURE

ST Spot Detector: a web-based application for automatic spot and tissue detection for spatial Transcriptomics image datasets

(2018) Kim Wong et al.   BIOINFORMATICS

Spatial transcriptomic survey of human embryonic cerebral cortex by single-cell RNA-seq analysis

(2018) Xiaoying Fan et al.   CELL RESEARCH

Perinatal Origins of Adult Disease

(2018) Umberto Simeoni et al.   Neonatology

Fetal liver: an ideal niche for hematopoietic stem cell expansion

(2018) Suwei Gao et al.   Science China-Life Sciences

Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity

(2018) Emelie Berglund et al.   Nature Communications

Barcoded solid-phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections

(2018) Fredrik Salmén et al.   Nature Protocols

Pathological process of liver sinusoidal endothelial cells in liver diseases

(2017) Yao Ni et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Spatial detection of fetal marker genes expressed at low level in adult human heart tissue

(2017) Michaela Asp et al.   Scientific Reports

Association of Serum Autotaxin Levels with Liver Fibrosis in Patients with Chronic Hepatitis C

(2017) Tomoo Yamazaki et al.   Scientific Reports

Current status and recent advances of next generation sequencing techniques in immunological repertoire

(2016) X-L Hou et al.   GENES AND IMMUNITY

Regulation of liver development: implications for liver biology across the lifespan

(2016) Philip A Gruppuso et al.   JOURNAL OF MOLECULAR ENDOCRINOLOGY

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

(2016) P. L. Stahl et al.   SCIENCE

Orchestrating liver development

(2015) M. Gordillo et al.   DEVELOPMENT

Spatial reconstruction of single-cell gene expression data

(2015) Rahul Satija et al.   NATURE BIOTECHNOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Single-Cell Analysis Reveals Functionally Distinct Classes within the Planarian Stem Cell Compartment

(2014) Josien C. van Wolfswinkel et al.   Cell Stem Cell

Embryonic hematopoiesis

(2013) Rachel Golub et al.   BLOOD CELLS MOLECULES AND DISEASES

Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing

(2013) Zhigang Xue et al.   NATURE

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

(2013) Alex K. Shalek et al.   NATURE

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Single-cell dissection of transcriptional heterogeneity in human colon tumors

(2011) Piero Dalerba et al.   NATURE BIOTECHNOLOGY