Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development

Progressive Recruitment of Mesenchymal Progenitors Reveals a Time-Dependent Process of Cell Fate Acquisition in Mouse and Human Nephrogenesis

(2018) Nils O. Lindström et al.   DEVELOPMENTAL CELL

Haploinsufficiency for the Six2 gene increases nephron progenitor proliferation promoting branching and nephron number

(2018) Alexander N. Combes et al.   KIDNEY INTERNATIONAL

Fibroblast growth factor 1 ameliorates diabetic nephropathy by an anti-inflammatory mechanism

(2018) Guang Liang et al.   KIDNEY INTERNATIONAL

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors

(2018) Laleh Haghverdi et al.   NATURE BIOTECHNOLOGY

Parental haplotype-specific single-cell transcriptomics reveal incomplete epigenetic reprogramming in human female germ cells

(2018) Ábel Vértesy et al.   Nature Communications

Dissecting the Global Dynamic Molecular Profiles of Human Fetal Kidney Development by Single-Cell RNA Sequencing

(2018) Ping Wang et al.   Cell Reports

Foxc1 and Foxc2 are necessary to maintain glomerular podocytes

(2017) Masaru Motojima et al.   EXPERIMENTAL CELL RESEARCH

c-jun is differentially expressed in embryonic and adult neural precursor cells

(2017) Fumiaki Kawashima et al.   HISTOCHEMISTRY AND CELL BIOLOGY

Embryonic AP1 Transcription Factor Deficiency Causes a Collodion Baby-Like Phenotype

(2017) Christina A. Young et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Podocytes regulate the glomerular basement membrane protein nephronectin by means of miR-378a-3p in glomerular diseases

(2017) Janina Müller-Deile et al.   KIDNEY INTERNATIONAL

Single-cell sequencing reveals dissociation-induced gene expression in tissue subpopulations

(2017) Susanne C van den Brink et al.   NATURE METHODS

Reversed graph embedding resolves complex single-cell trajectories

(2017) Xiaojie Qiu et al.   NATURE METHODS

Mechanical challenges to the glomerulus and podocyte loss: evolution of a paradigm

(2017) Kevin V. Lemley   PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY

Podocytes from the diagnostic and therapeutic point of view

(2017) Janina Müller-Deile et al.   PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY

Cellular retinoid binding-proteins, CRBP, CRABP, FABP5: Effects on retinoid metabolism, function and related diseases

(2017) Joseph L. Napoli   PHARMACOLOGY & THERAPEUTICS

1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function

(2017) Mathias Gorski et al.   Scientific Reports

Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity

(2016) Anubha Mahajan et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Vascular Growth Factors and Glomerular Disease

(2016) Christina S. Bartlett et al.   Annual Review of Physiology

Cap mesenchyme cell swarming during kidney development is influenced by attraction, repulsion, and adhesion to the ureteric tip

(2016) Alexander N. Combes et al.   DEVELOPMENTAL BIOLOGY

Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function

(2016) Cristian Pattaro et al.   Nature Communications

The earliest metanephric arteriolar progenitors and their role in kidney vascular development

(2015) Maria Luisa S. Sequeira-Lopez et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Development of the follicular basement membrane during human gametogenesis and early folliculogenesis

(2015) A Heeren et al.   BMC DEVELOPMENTAL BIOLOGY

The Notch pathway mediates the angiotensin II-induced synthesis of extracellular matrix components in podocytes

(2015) MIN YAO et al.   INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE

Computational assignment of cell-cycle stage from single-cell transcriptome data

(2015) Antonio Scialdone et al.   METHODS

Sall1 in renal stromal progenitors non-cell autonomously restricts the excessive expansion of nephron progenitors

(2015) Tomoko Ohmori et al.   Scientific Reports

KeyGenes, a Tool to Probe Tissue Differentiation Using a Human Fetal Transcriptional Atlas

(2015) Matthias S. Roost et al.   Stem Cell Reports

Spatially restricted hyaluronan production by Has2 drives epithelial tubulogenesis in vitro

(2014) Priscilla Soulié et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

Single cell dissection of early kidney development: multilineage priming

(2014) E. W. Brunskill et al.   DEVELOPMENT

FuseFISH: Robust Detection of Transcribed Gene Fusions in Single Cells

(2014) Stefan Semrau et al.   Cell Reports

The RNA-Binding Protein DDX1 Promotes Primary MicroRNA Maturation and Inhibits Ovarian Tumor Progression

(2014) Cecil Han et al.   Cell Reports

Identification of a Multipotent Self-Renewing Stromal Progenitor Population during Mammalian Kidney Organogenesis

(2014) Akio Kobayashi et al.   Stem Cell Reports

An Integrative Study of the Genetic, Social and Environmental Determinants of Chronic Kidney Disease Characterized by Tubulointerstitial Damages in the North Central Region of Sri Lanka

(2013) Shanika Nanayakkara et al.   JOURNAL OF OCCUPATIONAL HEALTH

Why and how we determine nephron number

(2013) John F. Bertram et al.   PEDIATRIC NEPHROLOGY

Mesenchymal stem cells protect podocytes from apoptosis induced by high glucose via secretion of epithelial growth factor

(2013) Diangeng Li et al.   Stem Cell Research & Therapy

Meta-analysis identifies multiple loci associated with kidney function–related traits in east Asian populations

(2012) Yukinori Okada et al.   NATURE GENETICS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Mammalian Kidney Development: Principles, Progress, and Projections

(2012) M. H. Little et al.   Cold Spring Harbor Perspectives in Biology

Genetic controls and cellular behaviors in branching morphogenesis of the renal collecting system

(2012) Frank Costantini   Wiley Interdisciplinary Reviews-Developmental Biology

Defining the Molecular Character of the Developing and Adult Kidney Podocyte

(2011) Eric W. Brunskill et al.   PLoS One

Patterning a Complex Organ: Branching Morphogenesis and Nephron Segmentation in Kidney Development

(2010) Frank Costantini et al.   DEVELOPMENTAL CELL

Uncx regulates proliferation of neural progenitor cells and neuronal survival in the olfactory epithelium

(2010) Neeraja Sammeta et al.   MOLECULAR AND CELLULAR NEUROSCIENCE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

High-resolution gene expression analysis of the developing mouse kidney defines novel cellular compartments within the nephron progenitor population

(2009) Joshua W. Mugford et al.   DEVELOPMENTAL BIOLOGY

Regulation of the Hyaluronan Synthase 2 Gene by Convergence in Cyclic AMP Response Element-binding Protein and Retinoid Acid Receptor Signaling

(2009) Katri M. Makkonen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

(2009) Steffen Durinck et al.   Nature Protocols

Osr1 expression demarcates a multi-potent population of intermediate mesoderm that undergoes progressive restriction to an Osr1-dependent nephron progenitor compartment within the mammalian kidney

(2008) Joshua W. Mugford et al.   DEVELOPMENTAL BIOLOGY

R-Spondin Family Members Regulate the Wnt Pathway by a Common Mechanism

(2008) Kyung-Ah Kim et al.   MOLECULAR BIOLOGY OF THE CELL