Genomics-informed responses in the elimination of COVID-19 in Victoria, Australia: an observational, genomic epidemiological study

Real-time monitoring shows substantial excess all-cause mortality during second wave of COVID-19 in Europe, October to December 2020

(2021) Sarah K. Nørgaard et al.   Eurosurveillance

Early transmissibility assessment of the N501Y mutant strains of SARS-CoV-2 in the United Kingdom, October to November 2020

(2021) Kathy Leung et al.   Eurosurveillance

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK

(2021) Louis du Plessis et al.   SCIENCE

Isolation and rapid sharing of the 2019 novel coronavirus ( SARS ‐CoV‐2) from the first patient diagnosed with COVID ‐19 in Australia

(2020) Leon Caly et al.   MEDICAL JOURNAL OF AUSTRALIA

INCREASED RISK OF SARS-CoV-2 INFECTION IN STAFF WORKING ACROSS DIFFERENT CARE HOMES ENCHANCED CoVID-19 OUTBREAK INVESTIGATIONS IN LONDON CARE HOMES

(2020) Shamez N Ladhani et al.   JOURNAL OF INFECTION

Rapid implementation of SARS-CoV-2 sequencing to investigate cases of health-care associated COVID-19: a prospective genomic surveillance study

(2020) Luke W Meredith et al.   LANCET INFECTIOUS DISEASES

New Zealand's COVID ‐19 elimination strategy

(2020) Michael G Baker et al.   MEDICAL JOURNAL OF AUSTRALIA

Estimating the effects of non-pharmaceutical interventions on COVID-19 in Europe

(2020) Seth Flaxman et al.   NATURE

Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling

(2020) Rebecca J. Rockett et al.   NATURE MEDICINE

Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands

(2020) Bas B. Oude Munnink et al.   NATURE MEDICINE

Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California

(2020) Xianding Deng et al.   SCIENCE

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

(2020) Andrew Rambaut et al.   Nature Microbiology

Genomic evidence for reinfection with SARS-CoV-2: a case study

(2020) Richard L Tillett et al.   LANCET INFECTIOUS DISEASES

Tracking the COVID-19 pandemic in Australia using genomics

(2020) Torsten Seemann et al.   Nature Communications

A cross-country database of COVID-19 testing

(2020) Joe Hasell et al.   Scientific Data

Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand

(2020) Jemma L. Geoghegan et al.   Nature Communications

Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis

(2020) Rowena A. Bull et al.   Nature Communications

Temporary “Circuit Breaker” Lockdowns Could Effectively Delay a COVID-19 Second Wave Infection Peak to Early Spring

(2020) Thomas Rawson et al.   Frontiers in Public Health

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

(2019) Remco Bouckaert et al.   PLoS Computational Biology