Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK

An interactive web-based dashboard to track COVID-19 in real time

(2020) Ensheng Dong et al.   LANCET INFECTIOUS DISEASES

Outbreak of Listeriosis in South Africa Associated with Processed Meat

(2020) Juno Thomas et al.   NEW ENGLAND JOURNAL OF MEDICINE

Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus–Infected Pneumonia

(2020) Qun Li et al.   NEW ENGLAND JOURNAL OF MEDICINE

Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China

(2020) Jing Lu et al.   CELL

Estimating the infection and case fatality ratio for coronavirus disease (COVID-19) using age-adjusted data from the outbreak on the Diamond Princess cruise ship, February 2020

(2020) Timothy W Russell et al.   Eurosurveillance

Estimation of the asymptomatic ratio of novel coronavirus infections (COVID-19)

(2020) Hiroshi Nishiura et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

First-wave COVID-19 transmissibility and severity in China outside Hubei after control measures, and second-wave scenario planning: a modelling impact assessment

(2020) Kathy Leung et al.   LANCET

An investigation of transmission control measures during the first 50 days of the COVID-19 epidemic in China

(2020) Huaiyu Tian et al.   SCIENCE

Covid-19: four fifths of cases are asymptomatic, China figures indicate

(2020) Michael Day   BMJ-British Medical Journal

Phylogenetic interpretation during outbreaks requires caution

(2020) Ch. Julián Villabona-Arenas et al.   Nature Microbiology

Estimates of the severity of coronavirus disease 2019: a model-based analysis

(2020) Robert Verity et al.   LANCET INFECTIOUS DISEASES

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

(2020) Andrew Rambaut et al.   Nature Microbiology

Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France

(2020) Lionel Roques et al.   Biology-Basel

Clustering and superspreading potential of SARS-CoV-2 infections in Hong Kong

(2020) Dillon C. Adam et al.   NATURE MEDICINE

The emergence of SARS-CoV-2 in Europe and North America

(2020) Michael Worobey et al.   SCIENCE

Inference of person-to-person transmission of COVID-19 reveals hidden super-spreading events during the early outbreak phase

(2020) Liang Wang et al.   Nature Communications

Tracking the COVID-19 pandemic in Australia using genomics

(2020) Torsten Seemann et al.   Nature Communications

Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity

(2020) Erik Volz et al.   CELL

Genomic epidemiology of syphilis reveals independent emergence of macrolide resistance across multiple circulating lineages

(2019) Mathew A. Beale et al.   Nature Communications

Detection of mobile colistin resistance gene mcr-9 in carbapenem-resistant Klebsiella pneumoniae strains of human origin in Europe

(2019) Yanan Wang et al.   JOURNAL OF INFECTION

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Bayesian inference of ancestral dates on bacterial phylogenetic trees

(2018) Xavier Didelot et al.   NUCLEIC ACIDS RESEARCH

Tracking virus outbreaks in the twenty-first century

(2018) Nathan D. Grubaugh et al.   Nature Microbiology

GISAID: Global initiative on sharing all influenza data – from vision to reality

(2017) Yuelong Shu et al.   Eurosurveillance

Middle East respiratory syndrome coronavirus (MERS-CoV) outbreak in South Korea, 2015: epidemiology, characteristics and public health implications

(2017) K.H. Kim et al.   JOURNAL OF HOSPITAL INFECTION

Quantifying Transmission Heterogeneity Using Both Pathogen Phylogenies and Incidence Time Series

(2017) Lucy M. Li et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic epidemiology reveals multiple introductions of Zika virus into the United States

(2017) Nathan D. Grubaugh et al.   NATURE

Virus genomes reveal factors that spread and sustained the Ebola epidemic

(2017) Gytis Dudas et al.   NATURE

Mathematical models to characterize early epidemic growth: A review

(2016) Gerardo Chowell et al.   Physics of Life Reviews

Near real-time monitoring of HIV transmission hotspots from routine HIV genotyping: an implementation case study

(2016) Art F Y Poon et al.   Lancet HIV

Chains of transmission and control of Ebola virus disease in Conakry, Guinea, in 2014: an observational study

(2015) Ousmane Faye et al.   LANCET INFECTIOUS DISEASES

Improving Bayesian Population Dynamics Inference: A Coalescent-Based Model for Multiple Loci

(2012) M. S. Gill et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolutionary Dynamics of Local Pandemic H1N1/2009 Influenza Virus Lineages Revealed by Whole-Genome Analysis

(2011) G. J. Baillie et al.   JOURNAL OF VIROLOGY

Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans

(2011) J. Bahl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bayesian analysis of elapsed times in continuous-time Markov chains

(2010) Marco A. R. Ferreira et al.   CANADIAN JOURNAL OF STATISTICS-REVUE CANADIENNE DE STATISTIQUE

Contents of This Issue

(2010) Johannes Hebebrand   Obesity Facts

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology