Tracking the COVID-19 pandemic in Australia using genomics

Extensive hospital in-ward clustering revealed by molecular characterization of influenza A virus infection

(2020) M Sansone et al.   CLINICAL INFECTIOUS DISEASES

Characteristics of and Important Lessons From the Coronavirus Disease 2019 (COVID-19) Outbreak in China

(2020) Zunyou Wu et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding

(2020) Roujian Lu et al.   LANCET

A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster

(2020) Jasper Fuk-Woo Chan et al.   LANCET

A pneumonia outbreak associated with a new coronavirus of probable bat origin

(2020) Peng Zhou et al.   NATURE

A Novel Coronavirus from Patients with Pneumonia in China, 2019

(2020) Na Zhu et al.   NEW ENGLAND JOURNAL OF MEDICINE

Whole genome and phylogenetic analysis of two SARS-CoV-2 strains isolated in Italy in January and February 2020: additional clues on multiple introductions and further circulation in Europe

(2020) Paola Stefanelli et al.   Eurosurveillance

Investigation of three clusters of COVID-19 in Singapore: implications for surveillance and response measures

(2020) Rachael Pung et al.   LANCET

Isolation and rapid sharing of the 2019 novel coronavirus ( SARS ‐CoV‐2) from the first patient diagnosed with COVID ‐19 in Australia

(2020) Leon Caly et al.   MEDICAL JOURNAL OF AUSTRALIA

Virological assessment of hospitalized patients with COVID-2019

(2020) Roman Wölfel et al.   NATURE

Death from Covid-19 of 23 Health Care Workers in China

(2020) Mingkun Zhan et al.   NEW ENGLAND JOURNAL OF MEDICINE

Phylogenetic network analysis of SARS-CoV-2 genomes

(2020) Peter Forster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Report from the American Society for Microbiology COVID-19 International Summit, 23 March 2020: Value of Diagnostic Testing for SARS–CoV-2/COVID-19

(2020) Robin Patel et al.   mBio

Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling

(2020) Rebecca J. Rockett et al.   NATURE MEDICINE

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

(2019) Remco Bouckaert et al.   PLoS Computational Biology

HIV Infection Linked to Injection Use of Oxymorphone in Indiana, 2014–2015

(2016) Philip J. Peters et al.   NEW ENGLAND JOURNAL OF MEDICINE

Near real-time monitoring of HIV transmission hotspots from routine HIV genotyping: an implementation case study

(2016) Art F Y Poon et al.   Lancet HIV

Getting to the root of epidemic spread with phylodynamic analysis of genomic data

(2015) Louis du Plessis et al.   TRENDS IN MICROBIOLOGY

Simulating and detecting autocorrelation of molecular evolutionary rates among lineages

(2014) Simon Y. W. Ho et al.   Molecular Ecology Resources

Automated analysis of phylogenetic clusters

(2013) Manon Ragonnet-Cronin et al.   BMC BIOINFORMATICS

Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)

(2012) T. Stadler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA