Large-scale reduction of theBacillus subtilisgenome: consequences for the transcriptional network, resource allocation, and metabolism

The quest for the minimal bacterial genome

(2016) Esteban Martínez-García et al.   CURRENT OPINION IN BIOTECHNOLOGY

The Blueprint of a Minimal Cell: MiniBacillus

(2016) Daniel R. Reuß et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Translation elicits a growth rate‐dependent, genome‐wide, differential protein production inBacillus subtilis

(2016) Olivier Borkowski et al.   Molecular Systems Biology

An increase in negative supercoiling in bacteria reveals topology-reacting gene clusters and a homeostatic response mediated by the DNA topoisomerase I gene

(2016) María-José Ferrándiz et al.   NUCLEIC ACIDS RESEARCH

Design and synthesis of a minimal bacterial genome

(2016) C. A. Hutchison et al.   SCIENCE

Unknown unknowns: essential genes in quest for function

(2016) Antoine Danchin et al.   Microbial Biotechnology

Minimal genome: Worthwhile or worthless efforts toward being smaller?

(2015) Donghui Choe et al.   Biotechnology Journal

Evidence for synergistic control of glutamate biosynthesis by glutamate dehydrogenases and glutamate inBacillus subtilis

(2015) Lorena Stannek et al.   ENVIRONMENTAL MICROBIOLOGY

Development of a markerless gene deletion system for Bacillus subtilis based on the mannose phosphoenolpyruvate-dependent phosphotransferase system

(2015) Marian Wenzel et al.   MICROBIOLOGY-SGM

Quantitative proteomic analysis reveals a simple strategy of global resource allocation in bacteria

(2015) S. Hui et al.   Molecular Systems Biology

SubtiWiki 2.0—an integrated database for the model organismBacillus subtilis

(2015) Raphael H. Michna et al.   NUCLEIC ACIDS RESEARCH

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Minimal genome: Worthwhile or worthless efforts toward being smaller?

(2015) Donghui Choe et al.   Biotechnology Journal

Construction of a Super-Competent Bacillus subtilis 168 Using the PmtlA-comKS Inducible Cassette

(2015) Regine Rahmer et al.   Frontiers in Microbiology

Progress Toward Synthetic Cells

(2014) J. Craig Blain et al.   Annual Review of Biochemistry

Systems Biology Perspectives on Minimal and Simpler Cells

(2014) J. C. Xavier et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Bacillus subtilis and Escherichia coli essential genes and minimal cell factories after one decade of genome engineering

(2014) M. Juhas et al.   MICROBIOLOGY-SGM

Genetic manipulations restored the growth fitness of reduced-genome Escherichia coli

(2013) Yasutaka Hirokawa et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Essential genes in Bacillus subtilis: a re-evaluation after ten years

(2013) Fabian M. Commichau et al.   Molecular BioSystems

Random and cyclical deletion of large DNA segments in the genome of Pseudomonas putida

(2012) Audrey Leprince et al.   ENVIRONMENTAL MICROBIOLOGY

Building the repertoire of dispensable chromosome regions in Bacillus subtilis entails major refinement of cognate large-scale metabolic model

(2012) Kosei Tanaka et al.   NUCLEIC ACIDS RESEARCH

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

(2012) P. Nicolas et al.   SCIENCE

Coupling AAA protein function to regulated gene expression

(2011) Nicolas Joly et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

All tangled up: how cells direct, manage and exploit topoisomerase function

(2011) Seychelle M. Vos et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Topoisomerase I regulates open chromatin and controls gene expression in vivo

(2010) Mickaël Durand-Dubief et al.   EMBO JOURNAL

Physical interactions between tricarboxylic acid cycle enzymes in Bacillus subtilis: Evidence for a metabolon

(2010) Frederik M. Meyer et al.   METABOLIC ENGINEERING

Genome-minimized Streptomyces host for the heterologous expression of secondary metabolism

(2010) M. Komatsu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome

(2010) D. G. Gibson et al.   SCIENCE

Minimal Escherichia coli Cell for the Most Efficient Production of Ethanol from Hexoses and Pentoses

(2008) C. T. Trinh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Growth-rate-dependent partitioning of RNA polymerases in bacteria

(2008) S. Klumpp et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA