The Transcriptomic Evolution of Mammalian Pregnancy: Gene Expression Innovations in Endometrial Stromal Fibroblasts

What was the ancestral function of decidual stromal cells? A model for the evolution of eutherian pregnancy

(2016) Arun Rajendra Chavan et al.   PLACENTA

Inferring cell type innovations by phylogenetic methods-concepts, methods, and limitations

(2015) Koryu Kin   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Character trees from transcriptome data: Origin and individuation of morphological characters and the so-called “species signal”

(2015) Jacob M. Musser et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

The statistical geometry of transcriptome divergence in cell-type evolution and cancer

(2015) Cong Liang et al.   Nature Communications

Control of regional decidualization in implantation: Role of FoxM1 downstream of Hoxa10 and cyclin D3

(2015) Fei Gao et al.   Scientific Reports

FoxM1 Directs STAT3 Expression Essential for Human Endometrial Stromal Decidualization

(2015) Yaling Jiang et al.   Scientific Reports

Cell-type Phylogenetics and the Origin of Endometrial Stromal Cells

(2015) Koryu Kin et al.   Cell Reports

Immunohistological Study of the Endometrial Stromal Fibroblasts in the Opossum, Monodelphis domestica: Evidence for Homology with Eutherian Stromal Fibroblasts1

(2014) Koryu Kin et al.   BIOLOGY OF REPRODUCTION

Cyclic Decidualization of the Human Endometrium in Reproductive Health and Failure

(2014) Birgit Gellersen et al.   ENDOCRINE REVIEWS

Evolution of mammalian pregnancy and the origin of the decidual stromal cell

(2014) Günter P. Wagner et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Genome-Wide DNA Methylation Analysis Predicts an Epigenetic Switch for GATA Factor Expression in Endometriosis

(2014) Matthew T. Dyson et al.   PLoS Genetics

Recombineering-based dissection of flanking and paralogous Hox gene functions in mouse reproductive tracts

(2013) A. M. Raines et al.   DEVELOPMENT

ANCESTRAL CHARACTER ESTIMATION UNDER THE THRESHOLD MODEL FROM QUANTITATIVE GENETICS

(2013) Liam J. Revell   EVOLUTION

No implantation in an extra-uterine pregnancy of a placentotrophic reptile

(2013) O.W. Griffith et al.   PLACENTA

A model based criterion for gene expression calls using RNA-seq data

(2013) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

A Comparative Method for Both Discrete and Continuous Characters Using the Threshold Model

(2012) Joseph Felsenstein   AMERICAN NATURALIST

Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny

(2012) M. dos Reis et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

Regulation of Terminal Differentiation Programs in the Nervous System

(2011) Oliver Hobert   Annual Review of Cell and Developmental Biology

The evolution of menstruation: A new model for genetic assimilation

(2011) Deena Emera et al.   BIOESSAYS

FOXO Transcription Factors and their Role in Disorders of the Female Reproductive Tract

(2011) Mark Christian et al.   CURRENT DRUG TARGETS

The regulation of embryo implantation and endometrial decidualization by progesterone receptor signaling

(2011) Michael J. Large et al.   MOLECULAR AND CELLULAR ENDOCRINOLOGY

Regulatory evolution through divergence of a phosphoswitch in the transcription factor CEBPB

(2011) Vincent J. Lynch et al.   NATURE

The evolution of gene expression levels in mammalian organs

(2011) David Brawand et al.   NATURE

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Evolution of a derived protein–protein interaction between HoxA11 and Foxo1a in mammals caused by changes in intramolecular regulation

(2011) Kathryn J. Brayer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ConsensusPathDB: toward a more complete picture of cell biology

(2010) Atanas Kamburov et al.   NUCLEIC ACIDS RESEARCH

Review: Marsupials: Placental Mammals with a Difference

(2010) M.B. Renfree   PLACENTA

Tracking Marsupial Evolution Using Archaic Genomic Retroposon Insertions

(2010) Maria A. Nilsson et al.   PLOS BIOLOGY

Regional development of uterine decidualization: Molecular signaling by Hoxa-10

(2009) Sanjoy K. Das   MOLECULAR REPRODUCTION AND DEVELOPMENT

Forcing cells to change lineages

(2009) Thomas Graf et al.   NATURE

Phylogenetic Evidence for Early Hemochorial Placentation in Eutheria

(2009) M.G. Elliot et al.   PLACENTA

CCN5/WISP-2 Expression in Breast Adenocarcinoma Is Associated with Less Frequent Progression of the Disease and Suppresses the Invasive Phenotypes of Tumor Cells

(2008) S. Banerjee et al.   CANCER RESEARCH

Evolution of Placentation in Primates: Implications of Mammalian Phylogeny

(2008) Robert D. Martin   Evolutionary Biology

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

(2008) A. J. Vilella et al.   GENOME RESEARCH

The evolution of cell types in animals: emerging principles from molecular studies

(2008) Detlev Arendt   NATURE REVIEWS GENETICS