Inferring cell type innovations by phylogenetic methods-concepts, methods, and limitations

Inferring Cell Differentiation Processes Based on Phylogenetic Analysis of Genome-Wide Epigenetic Information: Hematopoiesis as a Model Case

(2015) Kanako O. Koyanagi   Genome Biology and Evolution

Wiring for independence: Positive feedback motifs facilitate individuation of traits in development and evolution

(2015) Mihaela Pavličev et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Character trees from transcriptome data: Origin and individuation of morphological characters and the so-called “species signal”

(2015) Jacob M. Musser et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

The statistical geometry of transcriptome divergence in cell-type evolution and cancer

(2015) Cong Liang et al.   Nature Communications

Cell-type Phylogenetics and the Origin of Endometrial Stromal Cells

(2015) Koryu Kin et al.   Cell Reports

Study of cell differentiation by phylogenetic analysis using histone modification data

(2014) Nishanth Nair et al.   BMC BIOINFORMATICS

An estimation of the number of cells in the human body

(2013) Eva Bianconi et al.   ANNALS OF HUMAN BIOLOGY

The islet ghrelin cell

(2013) Nils Wierup et al.   JOURNAL OF MOLECULAR ENDOCRINOLOGY

DNA Methylation Dynamics during In Vivo Differentiation of Blood and Skin Stem Cells

(2012) Christoph Bock et al.   MOLECULAR CELL

Maintaining differentiated cellular identity

(2012) Johan Holmberg et al.   NATURE REVIEWS GENETICS

Regulation of Terminal Differentiation Programs in the Nervous System

(2011) Oliver Hobert   Annual Review of Cell and Developmental Biology

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

(2011)   PLOS BIOLOGY

History of studies on mammalian middle ear evolution: A comparative morphological and developmental biology perspective

(2010) Masaki Takechi et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

RNA: state memory and mediator of cellular phenotype

(2010) Junhyong Kim et al.   TRENDS IN CELL BIOLOGY

Reprogramming cell fates: reconciling rarity with robustness

(2009) Sui Huang   BIOESSAYS

Forcing cells to change lineages

(2009) Thomas Graf et al.   NATURE

Hematopoiesis: An Evolving Paradigm for Stem Cell Biology

(2008) Stuart H. Orkin et al.   CELL

The evolution of cell types in animals: emerging principles from molecular studies

(2008) Detlev Arendt   NATURE REVIEWS GENETICS