Deadwood-Inhabiting Bacteria Show Adaptations to Changing Carbon and Nitrogen Availability During Decomposition
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Title
Deadwood-Inhabiting Bacteria Show Adaptations to Changing Carbon and Nitrogen Availability During Decomposition
Authors
Keywords
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Journal
Frontiers in Microbiology
Volume 12, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2021-06-17
DOI
10.3389/fmicb.2021.685303
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Note: Only part of the references are listed.- Complementary Roles of Wood-Inhabiting Fungi and Bacteria Facilitate Deadwood Decomposition
- (2021) Vojtěch Tláskal et al. mSystems
- Fungal Communities Are Important Determinants of Bacterial Community Composition in Deadwood
- (2021) Iñaki Odriozola et al. mSystems
- Carbon fractions in the world’s dead wood
- (2021) Adam R. Martin et al. Nature Communications
- Oak decaying wood harbors taxonomically and functionally different bacterial communities in sapwood and heartwood
- (2021) S. Mieszkin et al. SOIL BIOLOGY & BIOCHEMISTRY
- Ecological Divergence Within the Enterobacterial Genus Sodalis: From Insect Symbionts to Inhabitants of Decomposing Deadwood
- (2021) Vojtěch Tláskal et al. Frontiers in Microbiology
- Feeding on fungi: Genomic and proteomic analysis of the enzymatic machinery of bacteria decomposing fungal biomass
- (2020) Robert Starke et al. ENVIRONMENTAL MICROBIOLOGY
- A synthesis of bacterial and archaeal phenotypic trait data
- (2020) Joshua S. Madin et al. Scientific Data
- Litter-inhabiting fungi show high level of specialization towards biopolymers composing plant and fungal biomass
- (2020) Camelia Algora Gallardo et al. BIOLOGY AND FERTILITY OF SOILS
- Publisher Correction: A genomic catalog of Earth’s microbiomes
- (2020) Stephen Nayfach et al. NATURE BIOTECHNOLOGY
- Bacteria from the endosphere and rhizosphere of Quercus spp. use mainly cell wall-associated enzymes to decompose organic matter
- (2019) Ana V. Lasa et al. PLoS One
- Lignocellulolytic systems of soil bacteria: A vast and diverse toolbox for biotechnological conversion processes
- (2019) Rubén López-Mondéjar et al. BIOTECHNOLOGY ADVANCES
- GToTree: a user-friendly workflow for phylogenomics
- (2019) Michael D Lee BIOINFORMATICS
- Composite Metagenome-Assembled Genomes Reduce the Quality of Public Genome Repositories
- (2019) Alon Shaiber et al. mBio
- Tracking of the activity of individual bacteria in temperate forest soils shows guild-specific responses to seasonality
- (2019) Salvador Lladó et al. SOIL BIOLOGY & BIOCHEMISTRY
- Fungal control of early-stage bacterial community development in decomposing wood
- (2019) Sarah R. Christofides et al. Fungal Ecology
- Decomposer food web in a deciduous forest shows high share of generalist microorganisms and importance of microbial biomass recycling
- (2018) Ruben López-Mondéjar et al. ISME Journal
- dbCAN2: a meta server for automated carbohydrate-active enzyme annotation
- (2018) Han Zhang et al. NUCLEIC ACIDS RESEARCH
- Nutrient content affects the turnover of fungal biomass in forest topsoil and the composition of associated microbial communities
- (2018) Vendula Brabcová et al. SOIL BIOLOGY & BIOCHEMISTRY
- Bacteria inhabiting deadwood of 13 tree species are heterogeneously distributed between sapwood and heartwood
- (2018) Julia Moll et al. ENVIRONMENTAL MICROBIOLOGY
- Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
- (2017) Robert M Bowers et al. NATURE BIOTECHNOLOGY
- Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
- (2017) Ryan R. Wick et al. PLoS Computational Biology
- Accumulation rates and sources of external nitrogen in decaying wood in a Norway spruce dominated forest
- (2016) Katja T. Rinne et al. FUNCTIONAL ECOLOGY
- Fungi associated with decomposing deadwood in a natural beech-dominated forest
- (2016) Petr Baldrian et al. Fungal Ecology
- Dead fungal mycelium in forest soil represents a decomposition hotspot and a habitat for a specific microbial community
- (2016) Vendula Brabcová et al. NEW PHYTOLOGIST
- Global biogeography of microbial nitrogen-cycling traits in soil
- (2016) Michaeline B. Nelson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- Impact of Phanerochaete chrysosporium on the Functional Diversity of Bacterial Communities Associated with Decaying Wood
- (2016) Vincent Hervé et al. PLoS One
- Cellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems
- (2016) Rubén López-Mondéjar et al. Scientific Reports
- Functional screening of abundant bacteria from acidic forest soil indicates the metabolic potential of Acidobacteria subdivision 1 for polysaccharide decomposition
- (2015) Salvador Lladó et al. BIOLOGY AND FERTILITY OF SOILS
- A pyrosequencing insight into sprawling bacterial diversity and community dynamics in decaying deadwood logs of Fagus sylvatica and Picea abies
- (2015) Björn Hoppe et al. Scientific Reports
- Genomic Potential for Polysaccharide Deconstruction in Bacteria
- (2014) Renaud Berlemont et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Nitrogen translocation and accumulation by a cord-forming fungus (Hypholoma fasciculare) into simulated woody debris
- (2014) T.J. Philpott et al. FOREST ECOLOGY AND MANAGEMENT
- CTFS-ForestGEO: a worldwide network monitoring forests in an era of global change
- (2014) Kristina J. Anderson-Teixeira et al. GLOBAL CHANGE BIOLOGY
- FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus
- (2014) Emmanuel Prestat et al. NUCLEIC ACIDS RESEARCH
- Potential of Cometabolic Transformation of Polysaccharides and Lignin in Lignocellulose by Soil Actinobacteria
- (2014) Tomáš Větrovský et al. PLoS One
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Diversity and structure of bacterial communities associated withPhanerochaete chrysosporiumduring wood decay
- (2013) Vincent Hervé et al. ENVIRONMENTAL MICROBIOLOGY
- Crossdating of disturbances by tree uprooting: Can treethrow microtopography persist for 6000years?
- (2013) P. Šamonil et al. FOREST ECOLOGY AND MANAGEMENT
- Functional Profiling and Distribution of the Forest Soil Bacterial Communities Along the Soil Mycorrhizosphere Continuum
- (2013) S. Uroz et al. MICROBIAL ECOLOGY
- The carbohydrate-active enzymes database (CAZy) in 2013
- (2013) Vincent Lombard et al. NUCLEIC ACIDS RESEARCH
- Phylogenetic Distribution of Potential Cellulases in Bacteria
- (2012) Renaud Berlemont et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Evidence for methane production by saprotrophic fungi
- (2012) Katharina Lenhart et al. Nature Communications
- A Large and Persistent Carbon Sink in the World's Forests
- (2011) Y. Pan et al. SCIENCE
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Local variability of stand structural features in beech dominated natural forests of Central Europe: Implications for sampling
- (2010) Kamil Král et al. FOREST ECOLOGY AND MANAGEMENT
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Impact of white-rot fungi on numbers and community composition of bacteria colonizing beech wood from forest soil
- (2009) Larissa B. Folman et al. FEMS MICROBIOLOGY ECOLOGY
- Methylovirgula ligni gen. nov., sp. nov., an obligately acidophilic, facultatively methylotrophic bacterium with a highly divergent mxaF gene
- (2009) A. V. Vorob'ev et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Phylogenetic composition and properties of bacteria coexisting with the fungus Hypholoma fasciculare in decaying wood
- (2009) Vendula Valášková et al. ISME Journal
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Global meta-analysis of wood decomposition rates: a role for trait variation among tree species?
- (2008) James T. Weedon et al. ECOLOGY LETTERS
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