Direct extraction of signal and noise correlations from two-photon calcium imaging of ensemble neuronal activity

Information-Limiting Correlations in Large Neural Populations

(2020) Ramon Bartolo et al.   JOURNAL OF NEUROSCIENCE

Fundamental bounds on the fidelity of sensory cortical coding

(2020) Oleg I. Rumyantsev et al.   NATURE

Functional organization of mouse primary auditory cortex in adult C57BL/6 and F1 (CBAxC57) mice

(2020) Zac Bowen et al.   Scientific Reports

Parallel Processing of Sound Dynamics across Mouse Auditory Cortex via Spatially Patterned Thalamic Inputs and Distinct Areal Intracortical Circuits

(2019) Ji Liu et al.   Cell Reports

Cellular and Widefield Imaging of Sound Frequency Organization in Primary and Higher Order Fields of the Mouse Auditory Cortex

(2019) Sandra Romero et al.   CEREBRAL CORTEX

Excitatory and Inhibitory Subnetworks Are Equally Selective during Decision-Making and Emerge Simultaneously during Learning

(2019) Farzaneh Najafi et al.   NEURON

Functional clustering of dendritic activity during decision-making

(2019) Aaron Kerlin et al.   eLife

Fast and Stable Signal Deconvolution via Compressible State-Space Models

(2018) Abbas Kazemipour et al.   IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING

Small Networks Encode Decision-Making in Primary Auditory Cortex

(2018) Nikolas A. Francis et al.   NEURON

Two-Photon Bidirectional Control and Imaging of Neuronal Excitability with High Spatial Resolution In Vivo

(2018) Angelo Forli et al.   Cell Reports

Robustness of Spike Deconvolution for Neuronal Calcium Imaging

(2018) Marius Pachitariu et al.   JOURNAL OF NEUROSCIENCE

Exact spike train inference via $\ell_{0}$ optimization

(2018) Sean Jewell et al.   Annals of Applied Statistics

Model Selection Techniques: An Overview

(2018) Jie Ding et al.   IEEE SIGNAL PROCESSING MAGAZINE

Intermingled Ensembles in Visual Association Cortex Encode Stimulus Identity or Predicted Outcome

(2018) Rohan N. Ramesh et al.   NEURON

Fast nonconvex deconvolution of calcium imaging data

(2018) Sean W Jewell et al.   BIOSTATISTICS

Computational processing of neural recordings from calcium imaging data

(2018) Carsen Stringer et al.   CURRENT OPINION IN NEUROBIOLOGY

Sublaminar Subdivision of Mouse Auditory Cortex Layer 2/3 Based on Functional Translaminar Connections

(2017) Xiangying Meng et al.   JOURNAL OF NEUROSCIENCE

Variational Inference: A Review for Statisticians

(2017) David M. Blei et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Inferring structural connectivity using Ising couplings in models of neuronal networks

(2017) Balasundaram Kadirvelu et al.   Scientific Reports

An integrated calcium imaging processing toolbox for the analysis of neuronal population dynamics

(2017) Sebastián A. Romano et al.   PLoS Computational Biology

Fast online deconvolution of calcium imaging data

(2017) Johannes Friedrich et al.   PLoS Computational Biology

Correlations and Neuronal Population Information

(2016) Adam Kohn et al.   Annual Review of Neuroscience

Separating Spike Count Correlation from Firing Rate Correlation

(2016) Giuseppe Vinci et al.   NEURAL COMPUTATION

Benchmarking Spike Rate Inference in Population Calcium Imaging

(2016) Lucas Theis et al.   NEURON

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data

(2016) Eftychios A. Pnevmatikakis et al.   NEURON

Accurate spike estimation from noisy calcium signals for ultrafast three-dimensional imaging of large neuronal populations in vivo

(2016) Thomas Deneux et al.   Nature Communications

Nonlinear Transfer of Signal and Noise Correlations in Cortical Networks

(2015) D. R. Lyamzin et al.   JOURNAL OF NEUROSCIENCE

Spatial organization of excitatory synaptic inputs to layer 4 neurons in mouse primary auditory cortex

(2015) Megan B. Kratz et al.   Frontiers in Neural Circuits

Efficient "Shotgun" Inference of Neural Connectivity from Highly Sub-sampled Activity Data

(2015) Daniel Soudry et al.   PLoS Computational Biology

Improved Estimation and Interpretation of Correlations in Neural Circuits

(2015) Dimitri Yatsenko et al.   PLoS Computational Biology

Hierarchy of Neural Organization in the Embryonic Spinal Cord: Granger-Causality Graph Analysis of Calcium Imaging Data

(2014) Fabrizio De Vico Fallani et al.   IEEE TRANSACTIONS ON NEURAL SYSTEMS AND REHABILITATION ENGINEERING

Crossmodal Induction of Thalamocortical Potentiation Leads to Enhanced Information Processing in the Auditory Cortex

(2014) Emily Petrus et al.   NEURON

State Dependence of Noise Correlations in Macaque Primary Visual Cortex

(2014) Alexander S. Ecker et al.   NEURON

Spatial pattern of intra-laminar connectivity in supragranular mouse auditory cortex

(2014) Paul V. Watkins et al.   Frontiers in Neural Circuits

Population coding in mouse visual cortex: response reliability and dissociability of stimulus tuning and noise correlation

(2014) Jorrit S. Montijn et al.   Frontiers in Computational Neuroscience

Convergence and Stability of Iteratively Re-weighted Least Squares Algorithms

(2013) Demba Ba et al.   IEEE TRANSACTIONS ON SIGNAL PROCESSING

Laminar Transformation of Frequency Organization in Auditory Cortex

(2013) D. E. Winkowski et al.   JOURNAL OF NEUROSCIENCE

Spatial and Temporal Scales of Neuronal Correlation in Visual Area V4

(2013) M. A. Smith et al.   JOURNAL OF NEUROSCIENCE

Bayesian Inference for Logistic Models Using Pólya–Gamma Latent Variables

(2013) Nicholas G. Polson et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

(2013) Misha B Ahrens et al.   NATURE METHODS

Inference of neuronal network spike dynamics and topology from calcium imaging data

(2013) Henry Lütcke et al.   Frontiers in Neural Circuits

Correlated Variability in Laminar Cortical Circuits

(2012) Bryan J. Hansen et al.   NEURON

A Bayesian approach for inferring neuronal connectivity from calcium fluorescent imaging data

(2011) Yuriy Mishchenko et al.   Annals of Applied Statistics

Higher-Order Interactions Characterized in Cortical Activity

(2011) S. Yu et al.   JOURNAL OF NEUROSCIENCE

Measuring and interpreting neuronal correlations

(2011) Marlene R Cohen et al.   NATURE NEUROSCIENCE

Fast Nonnegative Deconvolution for Spike Train Inference From Population Calcium Imaging

(2010) Joshua T. Vogelstein et al.   JOURNAL OF NEUROPHYSIOLOGY

High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision

(2010) Benjamin F Grewe et al.   NATURE METHODS

Functional organization and population dynamics in the mouse primary auditory cortex

(2010) Gideon Rothschild et al.   NATURE NEUROSCIENCE

Spike Inference from Calcium Imaging Using Sequential Monte Carlo Methods

(2009) Joshua T. Vogelstein et al.   BIOPHYSICAL JOURNAL

Gaussian-Process Factor Analysis for Low-Dimensional Single-Trial Analysis of Neural Population Activity

(2009) Byron M. Yu et al.   JOURNAL OF NEUROPHYSIOLOGY

Attention improves performance primarily by reducing interneuronal correlations

(2009) Marlene R Cohen et al.   NATURE NEUROSCIENCE

Stimulus-Dependent Correlations and Population Codes

(2009) Krešimir Josić et al.   NEURAL COMPUTATION

F1 (CBA×C57) mice show superior hearing in old age relative to their parental strains: Hybrid vigor or a new animal model for “Golden Ears”?

(2009) Robert D. Frisina et al.   NEUROBIOLOGY OF AGING