Differential DNA methylation and changing cell-type proportions as fibrotic stage progresses in NAFLD

Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software

(2020) Clémentine Decamps et al.   BMC BIOINFORMATICS

RETrace: simultaneous retrospective lineage tracing and methylation profiling of single cells

(2020) Christopher Jen-Yue Wei et al.   GENOME RESEARCH

The effects of epigenetic modification on the occurrence and progression of liver diseases and the involved mechanism

(2020) Liping Chen et al.   Expert Review of Gastroenterology & Hepatology

THE ROLE OF THE EPIGENOME IN HEART FAILURE

(2020) Roberto Papait et al.   PHYSIOLOGICAL REVIEWS

Characterization of the immune cell landscape of patients with NAFLD

(2020) Tom Diedrich et al.   PLoS One

Immunological distinctions between nonalcoholic steatohepatitis and hepatocellular carcinoma

(2020) Seo-Young Koo et al.   EXPERIMENTAL AND MOLECULAR MEDICINE

The role of omics in the pathophysiology, diagnosis and treatment of non-alcoholic fatty liver disease

(2020) Nikolaos Perakakis et al.   METABOLISM-CLINICAL AND EXPERIMENTAL

Integrative single-cell analysis

(2019) Tim Stuart et al.   NATURE REVIEWS GENETICS

A Peripheral Blood DNA Methylation Signature of Hepatic Fat Reveals a Potential Causal Pathway for Non-Alcoholic Fatty Liver Disease

(2019) Jiantao Ma et al.   DIABETES

Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia

(2019) Federico Gaiti et al.   NATURE

Single Cell RNA Sequencing Identifies Subsets of Hepatic Stellate Cells and Myofibroblastsin Liver Fibrosis

(2019) Oliver Krenkel et al.   Cells

The Burden of Hepatocellular Carcinoma in Non-Alcoholic Fatty Liver Disease: Screening Issue and Future Perspectives

(2019) Grazia Pennisi et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Resolving the fibrotic niche of human liver cirrhosis at single-cell level

(2019) P. Ramachandran et al.   NATURE

Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis

(2019) Ross Dobie et al.   Cell Reports

Plasma cell-free DNA methylation: a liquid biomarker of hepatic fibrosis

(2018) Buket Yiğit et al.   GUT

Differentially methylated loci in NAFLD cirrhosis are associated with key signaling pathways

(2018) Glenn S. Gerhard et al.   Clinical Epigenetics

Tracing human stem cell lineage during development using DNA methylation

(2018) Lucas A. Salas et al.   GENOME RESEARCH

Analysis of diet-induced differential methylation, expression, and interactions of lncRNA and protein-coding genes in mouse liver

(2018) Jose P. Silva et al.   Scientific Reports

Identification of differentially methylated region (DMR) networks associated with progression of nonalcoholic fatty liver disease

(2018) Kikuko Hotta et al.   Scientific Reports

Liver Fat is Associated With Markers of Inflammation and Oxidative Stress in Analysis of Data From the Framingham Heart Study

(2018) Zachary P. Fricker et al.   Clinical Gastroenterology and Hepatology

Altered DNA Methylation Sites in Peripheral Blood Leukocytes from Patients with Simple Steatosis and Nonalcoholic Steatohepatitis (NASH)

(2018) Jiayu Wu et al.   MEDICAL SCIENCE MONITOR

Human liver epigenetic alterations in non-alcoholic steatohepatitis are related to insulin action

(2017) Vanessa D. de Mello et al.   Epigenetics

Cell-type deconvolution in epigenome-wide association studies: a review and recommendations

(2017) Andrew E Teschendorff et al.   Epigenomics

GeneHancer: genome-wide integration of enhancers and target genes in GeneCards

(2017) Simon Fishilevich et al.   Database-The Journal of Biological Databases and Curation

DNA methylation in fibrosis

(2016) Christopher Dowson et al.   EUROPEAN JOURNAL OF CELL BIOLOGY

Plasma DNA methylation: a potential biomarker for stratification of liver fibrosis in non-alcoholic fatty liver disease

(2016) Timothy Hardy et al.   GUT

missMethyl: an R package for analyzing data from Illumina’s HumanMethylation450 platform

(2015) Belinda Phipson et al.   BIOINFORMATICS

Differential DNA methylation of genes involved in fibrosis progression in non-alcoholic fatty liver disease and alcoholic liver disease

(2015) Müjdat Zeybel et al.   Clinical Epigenetics

Building Predictive Models inRUsing thecaretPackage

(2015) Max Kuhn   Journal of Statistical Software

Epigenetic Changes during Hepatic Stellate Cell Activation

(2015) Silke Götze et al.   PLoS One

Genome-wide analysis of hepatic lipid content in extreme obesity

(2014) Johanna K. DiStefano et al.   ACTA DIABETOLOGICA

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

(2014) Martin J. Aryee et al.   BIOINFORMATICS

DNA Methylation Analysis in Nonalcoholic Fatty Liver Disease Suggests Distinct Disease-Specific and Remodeling Signatures after Bariatric Surgery

(2013) Markus Ahrens et al.   Cell Metabolism

Blood-based profiles of DNA methylation predict the underlying distribution of cell types

(2013) Devin C Koestler et al.   Epigenetics

Relationship Between Methylome and Transcriptome in Patients With Nonalcoholic Fatty Liver Disease

(2013) Susan K. Murphy et al.   GASTROENTEROLOGY

Low-level processing of Illumina Infinium DNA Methylation BeadArrays

(2013) Timothy J. Triche et al.   NUCLEIC ACIDS RESEARCH

Software for Computing and Annotating Genomic Ranges

(2013) Michael Lawrence et al.   PLoS Computational Biology

DNA methylation age of human tissues and cell types

(2013) Steve Horvath   GENOME BIOLOGY

CpGassoc: an R function for analysis of DNA methylation microarray data

(2012) Richard T. Barfield et al.   BIOINFORMATICS

An electronic health record-enabled obesity database

(2012) G Craig Wood et al.   BMC Medical Informatics and Decision Making

The role of Kupffer cells in the morphogenesis of nonalcoholic steatohepatitis – ultrastructural findings. The first report in pediatric patients

(2012) Joanna Maria Lotowska et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY

Apoptosis in nonalcoholic fatty liver disease: diagnostic and therapeutic implications

(2011) Naim Alkhouri et al.   Expert Review of Gastroenterology & Hepatology

Mechanisms of Disease Progression in Nonalcoholic Fatty Liver Disease

(2008) Janice Jou et al.   SEMINARS IN LIVER DISEASE