Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia

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Epigenetic plasticity and the hallmarks of cancer

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Cancer-specific changes in DNA methylation reveal aberrant silencing and activation of enhancers in leukemia

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Transcriptomic Characterization of SF3B1 Mutation Reveals Its Pleiotropic Effects in Chronic Lymphocytic Leukemia

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De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data

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DNA methylation dynamics during B cell maturation underlie a continuum of disease phenotypes in chronic lymphocytic leukemia

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Clonal evolution in patients with chronic lymphocytic leukaemia developing resistance to BTK inhibition

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Chromatin accessibility maps of chronic lymphocytic leukaemia identify subtype-specific epigenome signatures and transcription regulatory networks

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Mutations driving CLL and their evolution in progression and relapse

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A Big Bang model of human colorectal tumor growth

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G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

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Profiling DNA methylome landscapes of mammalian cells with single-cell reduced-representation bisulfite sequencing

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Cell-Cycle-Dependent Reconfiguration of the DNA Methylome during Terminal Differentiation of Human B Cells into Plasma Cells

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Locally Disordered Methylation Forms the Basis of Intratumor Methylome Variation in Chronic Lymphocytic Leukemia

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Ibrutinib-induced lymphocytosis in patients with chronic lymphocytic leukemia: correlative analyses from a phase II study

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Evolution and Impact of Subclonal Mutations in Chronic Lymphocytic Leukemia

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Cell lineage analysis of acute leukemia relapse uncovers the role of replication-rate heterogeneity and microsatellite instability

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The Influence of Rate Heterogeneity among Sites on the Time Dependence of Molecular Rates

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Epigenetic polymorphism and the stochastic formation of differentially methylated regions in normal and cancerous tissues

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Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

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Tumour evolution inferred by single-cell sequencing

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Increased methylation variation in epigenetic domains across cancer types

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The lymph node microenvironment promotes B-cell receptor signaling, NF- B activation, and tumor proliferation in chronic lymphocytic leukemia

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Mutation and epigenetic molecular clocks in cancer

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Orphan CpG Islands Identify Numerous Conserved Promoters in the Mammalian Genome

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Fast and accurate short read alignment with Burrows-Wheeler transform

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Inferring clonal expansion and cancer stem cell dynamics from DNA methylation patterns in colorectal cancers

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Relative value of ZAP-70, CD38, and immunoglobulin mutation status in predicting aggressive disease in chronic lymphocytic leukemia

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Model-based Analysis of ChIP-Seq (MACS)

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