Integrated analysis of Xist upregulation and X-chromosome inactivation with single-cell and single-allele resolution
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Title
Integrated analysis of Xist upregulation and X-chromosome inactivation with single-cell and single-allele resolution
Authors
Keywords
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Journal
Nature Communications
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-06-15
DOI
10.1038/s41467-021-23643-6
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Note: Only part of the references are listed.- Dosage Sensing, Threshold Responses, and Epigenetic Memory: A Systems Biology Perspective on Random X‐Chromosome Inactivation
- (2020) Verena Mutzel et al. BIOESSAYS
- Progress toward understanding chromosome silencing by Xist RNA
- (2020) Neil Brockdorff et al. GENES & DEVELOPMENT
- X-Chromosome Dosage Modulates Multiple Molecular and Cellular Properties of Mouse Pluripotent Stem Cells Independently of Global DNA Methylation Levels
- (2019) Juan Song et al. Stem Cell Reports
- Single-Cell RNA-Seq Reveals Cellular Heterogeneity of Pluripotency Transition and X Chromosome Dynamics during Early Mouse Development
- (2019) Shangli Cheng et al. Cell Reports
- A symmetric toggle switch explains the onset of random X inactivation in different mammals
- (2019) Verena Mutzel et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Kinetics of Xist-induced gene silencing can be predicted from combinations of epigenetic and genomic features
- (2019) Lisa Barros de Andrade e Sousa et al. GENOME RESEARCH
- The diverse roles of DNA methylation in mammalian development and disease
- (2019) Maxim V. C. Greenberg et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- The Complexity of PRC2 Subcomplexes
- (2019) Guido van Mierlo et al. TRENDS IN CELL BIOLOGY
- X-chromosome upregulation is driven by increased burst frequency
- (2019) Anton J. M. Larsson et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Nanog regulates Pou3f1 expression at the exit from pluripotency during gastrulation
- (2019) Antonio Barral et al. Biology Open
- Exit from Naive Pluripotency Induces a Transient X Chromosome Inactivation-like State in Males
- (2018) Elsa J. Sousa et al. Cell Stem Cell
- RNA velocity of single cells
- (2018) Gioele La Manno et al. NATURE
- Aligning Single-Cell Developmental and Reprogramming Trajectories Identifies Molecular Determinants of Myogenic Reprogramming Outcome
- (2018) Davide Cacchiarelli et al. Cell Systems
- The Implication of Early Chromatin Changes in X Chromosome Inactivation
- (2018) Jan Jakub Żylicz et al. CELL
- Sex Chromosome Effects on Male–Female Differences in Mammals
- (2018) Daniel M. Snell et al. CURRENT BIOLOGY
- Extensive cellular heterogeneity of X inactivation revealed by single-cell allele-specific expression in human fibroblasts
- (2018) Marco Garieri et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- REX1 is the critical target of RNF12 in imprinted X chromosome inactivation in mice
- (2018) Cristina Gontan et al. Nature Communications
- Comparative Analysis of Single-Cell RNA Sequencing Methods
- (2017) Christoph Ziegenhain et al. MOLECULAR CELL
- Landscape of X chromosome inactivation across human tissues
- (2017) Taru Tukiainen et al. NATURE
- Single-cell mRNA quantification and differential analysis with Census
- (2017) Xiaojie Qiu et al. NATURE METHODS
- Reversed graph embedding resolves complex single-cell trajectories
- (2017) Xiaojie Qiu et al. NATURE METHODS
- Xist-dependent imprinted X inactivation and the early developmental consequences of its failure
- (2017) Maud Borensztein et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Contribution of epigenetic landscapes and transcription factors to X-chromosome reactivation in the inner cell mass
- (2017) Maud Borensztein et al. Nature Communications
- Xist-dependent imprinted X inactivation and the early developmental consequences of its failure
- (2017) Maud Borensztein et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Single-Cell Landscape of Transcriptional Heterogeneity and Cell Fate Decisions during Mouse Early Gastrulation
- (2017) Hisham Mohammed et al. Cell Reports
- Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos
- (2016) Sophie Petropoulos et al. CELL
- Single-cell analyses of X Chromosome inactivation dynamics and pluripotency during differentiation
- (2016) Geng Chen et al. GENOME RESEARCH
- Have humans lost control: The elusive X-controlling element
- (2016) Samantha B. Peeters et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Dosage compensation of the sex chromosomes and autosomes
- (2016) Christine M. Disteche SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Escape Artists of the X Chromosome
- (2016) Bradley P. Balaton et al. TRENDS IN GENETICS
- Regulation of X-linked gene expression during early mouse development by Rlim
- (2016) Feng Wang et al. eLife
- Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
- (2015) Evan Z. Macosko et al. CELL
- Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation
- (2015) Aleksandra A. Kolodziejczyk et al. Cell Stem Cell
- X-chromosome inactivation: new insights into cis and trans regulation
- (2015) Rafael Galupa et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- The Nature of Embryonic Stem Cells
- (2014) Graziano Martello et al. Annual Review of Cell and Developmental Biology
- The Two Active X Chromosomes in Female ESCs Block Exit from the Pluripotent State by Modulating the ESC Signaling Network
- (2014) Edda G. Schulz et al. Cell Stem Cell
- Pim kinases in hematological malignancies: where are we now and where are we going?
- (2014) Patrizia Mondello et al. Journal of Hematology & Oncology
- The Trans-Activator RNF12 and Cis-Acting Elements Effectuate X Chromosome Inactivation Independent of X-Pairing
- (2014) Tahsin Stefan Barakat et al. MOLECULAR CELL
- The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
- (2014) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Live Cell Imaging of the Nascent Inactive X Chromosome during the Early Differentiation Process of Naive ES Cells towards Epiblast Stem Cells
- (2014) Aurélia Guyochin et al. PLoS One
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Genome engineering using the CRISPR-Cas9 system
- (2013) F Ann Ran et al. Nature Protocols
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Epiblast Stem Cell-Based System Reveals Reprogramming Synergy of Germline Factors
- (2012) Astrid Gillich et al. Cell Stem Cell
- RNF12 initiates X-chromosome inactivation by targeting REX1 for degradation
- (2012) Cristina Gontan et al. NATURE
- Molecular coupling of Tsix regulation and pluripotency
- (2010) Pablo Navarro et al. NATURE
- A scaling normalization method for differential expression analysis of RNA-seq data
- (2010) Mark D Robinson et al. GENOME BIOLOGY
- RNF12 Is an X-Encoded Dose-Dependent Activator of X Chromosome Inactivation
- (2009) Iris Jonkers et al. CELL
- The pluripotency factor Oct4 interacts with Ctcf and also controls X-chromosome pairing and counting
- (2009) Mary E. Donohoe et al. NATURE
- X Inactivation Counting and Choice Is a Stochastic Process: Evidence for Involvement of an X-Linked Activator
- (2008) Kim Monkhorst et al. CELL
- Molecular Coupling of Xist Regulation and Pluripotency
- (2008) P. Navarro et al. SCIENCE
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