A pig BodyMap transcriptome reveals diverse tissue physiologies and evolutionary dynamics of transcription
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Title
A pig BodyMap transcriptome reveals diverse tissue physiologies and evolutionary dynamics of transcription
Authors
Keywords
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Journal
Nature Communications
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-06-17
DOI
10.1038/s41467-021-23560-8
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Note: Only part of the references are listed.- SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor
- (2020) Markus Hoffmann et al. CELL
- Expanded encyclopaedias of DNA elements in the human and mouse genomes
- (2020) Jill E. Moore et al. NATURE
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- (2020) Amanda Warr et al. GigaScience
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- (2019) Volkan Okur et al. EUROPEAN JOURNAL OF HUMAN GENETICS
- Cell-Type Heterogeneity in Adipose Tissue Is Associated with Complex Traits and Reveals Disease-Relevant Cell-Specific eQTLs
- (2019) Craig A. Glastonbury et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Determining cell type abundance and expression from bulk tissues with digital cytometry
- (2019) Aaron M. Newman et al. NATURE BIOTECHNOLOGY
- Long-range enhancer–promoter contacts in gene expression control
- (2019) Stefan Schoenfelder et al. NATURE REVIEWS GENETICS
- Multi-species annotation of transcriptome and chromatin structure in domesticated animals
- (2019) Sylvain Foissac et al. BMC BIOLOGY
- Neuromuscular Junction Formation, Aging, and Disorders
- (2018) Lei Li et al. Annual Review of Physiology
- Anatomical, Physiological, and Functional Diversity of Adipose Tissue
- (2018) Rachel K. Zwick et al. Cell Metabolism
- Transcriptional profiling reveals extraordinary diversity among skeletal muscle tissues
- (2018) Erin E Terry et al. eLife
- Dynamic evolution of regulatory element ensembles in primate CD4+ T cells
- (2018) Charles G. Danko et al. Nature Ecology & Evolution
- Three-dimensional genome structures of single diploid human cells
- (2018) Longzhi Tan et al. SCIENCE
- Dimensionality reduction for visualizing single-cell data using UMAP
- (2018) Etienne Becht et al. NATURE BIOTECHNOLOGY
- gga-mir-133a-3p Regulates Myoblasts Proliferation and Differentiation by Targeting PRRX1
- (2018) Lijin Guo et al. Frontiers in Genetics
- An atlas of human long non-coding RNAs with accurate 5′ ends
- (2017) Chung-Chau Hon et al. NATURE
- Genetic effects on gene expression across human tissues
- (2017) François Aguet et al. NATURE
- Adapting to obesity with adipose tissue inflammation
- (2017) Shannon M. Reilly et al. Nature Reviews Endocrinology
- AMPK: guardian of metabolism and mitochondrial homeostasis
- (2017) Sébastien Herzig et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Promoter-enhancer interactions identified from Hi-C data using probabilistic models and hierarchical topological domains
- (2017) Gil Ron et al. Nature Communications
- Mitochondrial respiratory gene expression is suppressed in many cancers
- (2017) Ed Reznik et al. eLife
- Global mRNA sequencing of human skeletal muscle: Search for novel exercise-regulated myokines
- (2017) S. Pourteymour et al. Molecular Metabolism
- Complexity and conservation of regulatory landscapes underlie evolutionary resilience of mammalian gene expression
- (2017) Camille Berthelot et al. Nature Ecology & Evolution
- Combined defects in oxidative phosphorylation and fatty acid -oxidation in mitochondrial disease
- (2016) A. Nsiah-Sefaa et al. BIOSCIENCE REPORTS
- Diverse alternative back-splicing and alternative splicing landscape of circular RNAs
- (2016) Xiao-Ou Zhang et al. GENOME RESEARCH
- Near-optimal probabilistic RNA-seq quantification
- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
- TACO produces robust multisample transcriptome assemblies from RNA-seq
- (2016) Yashar S Niknafs et al. NATURE METHODS
- Unique features of long non-coding RNA biogenesis and function
- (2016) Jeffrey J. Quinn et al. NATURE REVIEWS GENETICS
- The biogenesis and emerging roles of circular RNAs
- (2016) Ling-Ling Chen NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Emerging Complexities in Adipocyte Origins and Identity
- (2016) Joan Sanchez-Gurmaches et al. TRENDS IN CELL BIOLOGY
- A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome
- (2016) Anthony D. Schmitt et al. Cell Reports
- Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
- (2016) Neva C. Durand et al. Cell Systems
- Skeletal muscle as an endocrine organ: PGC-1α, myokines and exercise
- (2015) Svenia Schnyder et al. BONE
- The RNA Binding Protein Quaking Regulates Formation of circRNAs
- (2015) Simon J. Conn et al. CELL
- Cellular and molecular insights into Hox protein action
- (2015) R. Rezsohazy et al. DEVELOPMENT
- Vascular endothelial growth factors: multitasking functionality in metabolism, health and disease
- (2015) Gina A. Smith et al. JOURNAL OF INHERITED METABOLIC DISEASE
- Engineering large animal models of human disease
- (2015) C Bruce A Whitelaw et al. JOURNAL OF PATHOLOGY
- The role of genetically engineered pigs in xenotransplantation research
- (2015) David KC Cooper et al. JOURNAL OF PATHOLOGY
- Innervation and neuromuscular control in ageing skeletal muscle
- (2015) Russell T. Hepple et al. JOURNAL OF PHYSIOLOGY-LONDON
- Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity
- (2015) Xintian You et al. NATURE NEUROSCIENCE
- MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins
- (2015) Sarah E. Calvo et al. NUCLEIC ACIDS RESEARCH
- Fat depot-specific expression ofHOXC9andHOXC10may contribute to adverse fat distribution and related metabolic traits
- (2015) Jakob E. Brune et al. Obesity
- The human transcriptome across tissues and individuals
- (2015) M. Mele et al. SCIENCE
- Genes from scratch – the evolutionary fate of de novo genes
- (2015) Christian Schlötterer TRENDS IN GENETICS
- Origins of De Novo Genes in Human and Chimpanzee
- (2015) Jorge Ruiz-Orera et al. PLoS Genetics
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- (2015) Leif Andersson et al. GENOME BIOLOGY
- Complementary Sequence-Mediated Exon Circularization
- (2014) Xiao-Ou Zhang et al. CELL
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- (2014) Evan D. Rosen et al. CELL
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- (2014) Margaret Buckingham et al. DEVELOPMENTAL CELL
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- (2014) Anamaria Necsulea et al. NATURE REVIEWS GENETICS
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- (2012) Jesse R. Dixon et al. NATURE
- Pharyngeal mesoderm regulatory network controls cardiac and head muscle morphogenesis
- (2012) I. Harel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolutionary Dynamics of Gene and Isoform Regulation in Mammalian Tissues
- (2012) J. Merkin et al. SCIENCE
- The Evolutionary Landscape of Alternative Splicing in Vertebrate Species
- (2012) N. L. Barbosa-Morais et al. SCIENCE
- Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
- (2011) M. N. Cabili et al. GENES & DEVELOPMENT
- Human Masseter Muscle Fiber Type Properties, Skeletal Malocclusions, and Muscle Growth Factor Expression
- (2011) James Joseph Sciote et al. JOURNAL OF ORAL AND MAXILLOFACIAL SURGERY
- On Marathons and Sprints: An Integrated Quantitative Proteomics and Transcriptomics Analysis of Differences Between Slow and Fast Muscle Fibers
- (2011) Hannes C. A. Drexler et al. MOLECULAR & CELLULAR PROTEOMICS
- Fiber Types in Mammalian Skeletal Muscles
- (2011) Stefano Schiaffino et al. PHYSIOLOGICAL REVIEWS
- Microgenomic Analysis in Skeletal Muscle: Expression Signatures of Individual Fast and Slow Myofibers
- (2011) Francesco Chemello et al. PLoS One
- Positional Identity of Murine Mesenchymal Stem Cells Resident in Different Organs Is Determined in the Postsegmentation Mesoderm
- (2011) Bernadett Sági et al. STEM CELLS AND DEVELOPMENT
- Differential expression and localization of 12/15 lipoxygenases in adipose tissue in human obese subjects
- (2010) Anca D. Dobrian et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- To build a synapse: signaling pathways in neuromuscular junction assembly
- (2010) H. Wu et al. DEVELOPMENT
- The Role of Mitochondria in the Pathogenesis of Type 2 Diabetes
- (2010) Mary-Elizabeth Patti et al. ENDOCRINE REVIEWS
- The molecular characterization and associations of porcine cardiomyopathy asssociated 5 (CMYA5) gene with carcass trait and meat quality
- (2010) Xiaoling Xu et al. MOLECULAR BIOLOGY REPORTS
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Mitochondrial fusion and fission in cell life and death
- (2010) Benedikt Westermann NATURE REVIEWS MOLECULAR CELL BIOLOGY
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Distinct Origins and Genetic Programs of Head Muscle Satellite Cells
- (2009) Itamar Harel et al. DEVELOPMENTAL CELL
- Thrombin increases inflammatory cytokine and angiogenic growth factor secretion in human adipose cells in vitro
- (2009) Jennifer L Strande et al. Journal of Inflammation-London
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- Generation of Monoclonal Antibodies Specific for Cell Surface Molecules Expressed on Early Mouse Endoderm
- (2009) Paul Gadue et al. STEM CELLS
- Nectin-1 (HveC) is expressed at high levels in neural subtypes that regulate radial migration of cortical and cerebellar neurons of the developing human and murine brain
- (2008) Emese Prandovszky et al. JOURNAL OF NEUROVIROLOGY
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