Museomics of a rare taxon: placing Whalleyanidae in the Lepidoptera Tree of Life

Adding leaves to the Lepidoptera tree: capturing hundreds of nuclear genes from old museum specimens

(2021) Christoph Mayer et al.   SYSTEMATIC ENTOMOLOGY

Genomes of skipper butterflies reveal extensive convergence of wing patterns

(2019) Wenlin Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Museum genomics reveals the speciation history of Dendrortyx wood-partridges in the Mesoamerican highlands

(2019) Whitney L.E. Tsai et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Whole genome shotgun phylogenomics resolves the pattern and timing of swallowtail butterfly evolution

(2019) Rémi Allio et al.   SYSTEMATIC BIOLOGY

Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths

(2019) Akito Y. Kawahara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lepidoptera genomes: current knowledge, gaps and future directions

(2018) Deborah A Triant et al.   Current Opinion in Insect Science

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Investigating the genomic basis of discrete phenotypes using a Pool-Seq-only approach: New insights into the genetics underlying colour variation in diverse taxa

(2017) Ramprasad Neethiraj et al.   MOLECULAR ECOLOGY

Sequencing historical specimens: successful preparation of small specimens with low amounts of degraded DNA

(2017) John S. Sproul et al.   Molecular Ecology Resources

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness

(2017) Michiru Nishita et al.   Scientific Reports

Museums are biobanks: unlocking the genetic potential of the three billion specimens in the world's biological collections

(2016) David K Yeates et al.   Current Opinion in Insect Science

Sequence Capture and Phylogenetic Utility of Genomic Ultraconserved Elements Obtained from Pinned Insect Specimens

(2016) Bonnie B. Blaimer et al.   PLoS One

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Valuing museum specimens: high-throughput DNA sequencing on historical collections of New Guinea crowned pigeons (Goura)

(2015) Guillaume Besnard et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

The use of museum samples for large-scale sequence capture: a study of congeneric horseshoe bats (family Rhinolophidae)

(2015) Sebastian E. Bailey et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Elusive ditrysian phylogeny: an account of combining systematized morphology with molecular data (Lepidoptera)

(2015) Maria Heikkilä et al.   BMC EVOLUTIONARY BIOLOGY

Sequence capture of ultraconserved elements from bird museum specimens

(2015) John E. McCormack et al.   Molecular Ecology Resources

DNA barcodes from century-old type specimens using next-generation sequencing

(2015) Sean W. J. Prosser et al.   Molecular Ecology Resources

Advances in Geometroidea phylogeny, with characterization of a new family based onPseudobiston pinratanai(Lepidoptera, Glossata)

(2015) Hossein Rajaei et al.   ZOOLOGICA SCRIPTA

Successful Recovery of Nuclear Protein-Coding Genes from Small Insects in Museums Using Illumina Sequencing

(2015) Kojun Kanda et al.   PLoS One

The future of ancient DNA: Technical advances and conceptual shifts

(2014) Michael Hofreiter et al.   BIOESSAYS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

From museums to genomics: old herbarium specimens shed light on a C3 to C4 transition

(2014) Guillaume Besnard et al.   JOURNAL OF EXPERIMENTAL BOTANY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sequencing Degraded DNA from Non-Destructively Sampled Museum Specimens for RAD-Tagging and Low-Coverage Shotgun Phylogenetics

(2014) Mandy Man-Ying Tin et al.   PLoS One

Phylogenomics provides strong evidence for relationships of butterflies and moths

(2014) A. Y. Kawahara et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Species delimitation in the ground beetle subgenusLiocosmius(Coleoptera: Carabidae:Bembidion), including standard and next-generation sequencing of museum specimens

(2014) David R. Maddison et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Unlocking the vault: next-generation museum population genomics

(2013) Ke Bi et al.   MOLECULAR ECOLOGY

Characterizing DNA preservation in degraded specimens ofAmara alpina(Carabidae: Coleoptera)

(2013) Peter D. Heintzman et al.   Molecular Ecology Resources

A Large-Scale, Higher-Level, Molecular Phylogenetic Study of the Insect Order Lepidoptera (Moths and Butterflies)

(2013) Jerome C. Regier et al.   PLoS One

Genomic Treasure Troves: Complete Genome Sequencing of Herbarium and Insect Museum Specimens

(2013) Martijn Staats et al.   PLoS One

Timing and Patterns in the Taxonomic Diversification of Lepidoptera (Butterflies and Moths)

(2013) Niklas Wahlberg et al.   PLoS One

Can RNA-Seq Resolve the Rapid Radiation of Advanced Moths and Butterflies (Hexapoda: Lepidoptera: Apoditrysia)? An Exploratory Study

(2013) Adam L. Bazinet et al.   PLoS One

Millennial-scale isotope records from a wide-ranging predator show evidence of recent human impact to oceanic food webs

(2013) A. E. Wiley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The assignment of Prodidactidae to Hyblaeoidea, with remarks on Thyridoidea (Lepidoptera)

(2013) LAURI KAILA et al.   ZOOTAXA

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Mitogenomic analyses from ancient DNA

(2012) Johanna L.A. Paijmans et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

VoSeq: A Voucher and DNA Sequence Web Application

(2012) Carlos Peña et al.   PLoS One

The Taxonomic Significance of Species That Have Only Been Observed Once: The Genus Gymnodinium (Dinoflagellata) as an Example

(2012) Anne E. Thessen et al.   PLoS One

Resolving Discrepancy between Nucleotides and Amino Acids in Deep-Level Arthropod Phylogenomics: Differentiating Serine Codons in 21-Amino-Acid Models

(2012) Andreas Zwick et al.   PLoS One

A High-Coverage Genome Sequence from an Archaic Denisovan Individual

(2012) M. Meyer et al.   SCIENCE

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Museum genomics: low-cost and high-accuracy genetic data from historical specimens

(2011) KEVIN C. ROWE et al.   Molecular Ecology Resources

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

(2010) Jerome C. Regier et al.   NATURE

Comprehensive gene and taxon coverage elucidates radiation patterns in moths and butterflies

(2010) M. Mutanen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS