Microbial community responses to land-use types and its ecological roles in mining area

Labile fractions of soil nutrients shape the distribution of bacterial communities towards phosphorus recycling systems over elevation gradients in Gongga Mountain, SW China

(2020) Hongyang Sun et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Similar drivers but different effects lead to distinct ecological patterns of soil bacterial and archaeal communities

(2020) Guangshan Wei et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrate removal characteristics and 13C metabolic pathways of aerobic denitrifying bacterium Paracoccus denitrificans Z195

(2020) Haihan Zhang et al.   BIORESOURCE TECHNOLOGY

Performance and mechanism of carbon dioxide fixation by a newly isolated chemoautotrophic strain Paracoccus denitrificans PJ-1

(2020) Jiexu Ye et al.   CHEMOSPHERE

Soil microbial succession following surface mining is governed primarily by deterministic factors

(2020) Jennifer L Kane et al.   FEMS MICROBIOLOGY ECOLOGY

Pollution and health risk assessment of toxic metal(loid)s in soils under different land use in sulphide mineralized areas

(2020) Liang Ma et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Soil properties rather than climate and ecosystem type control the vertical variations of soil organic carbon, microbial carbon, and microbial quotient

(2020) Tingting Sun et al.   SOIL BIOLOGY & BIOCHEMISTRY

Thallium shifts the bacterial and fungal community structures in thallium mine waste rocks

(2020) Enzong Xiao et al.   ENVIRONMENTAL POLLUTION

Contamination, oral bioaccessibility and human health risk assessment of thallium and other metal(loid)s in farmland soils around a historic Tl Hg mining area

(2020) Zengping Ning et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Sulfur-based Mixotrophic Vanadium (V) Bio-reduction towards Lower Organic Requirement and Sulfate Accumulation

(2020) Zhongli Wang et al.   WATER RESEARCH

A newly discovered function of nitrate reductase in chemoautotrophic vanadate transformation by natural mackinawite in aquifer

(2020) Chao He et al.   WATER RESEARCH

Microbial Community Responses to Vanadium Distributions in Mining Geological Environments and Bioremediation Assessment

(2019) Baogang Zhang et al.   Journal of Geophysical Research-Biogeosciences

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Bacterial response to antimony and arsenic contamination in rice paddies during different flooding conditions

(2019) Weimin Sun et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Variation in rhizosphere microbiota correlates with edaphic factor in an abandoned antimony tailing dump

(2019) Enzong Xiao et al.   ENVIRONMENTAL POLLUTION

Shallow groundwater table fluctuations affect bacterial communities and nitrogen functional genes along the soil profile in a vegetable field

(2019) Dan Zhang et al.   APPLIED SOIL ECOLOGY

Soil characteristics and land-use drive bacterial community assembly patterns

(2019) Samuel E Barnett et al.   FEMS MICROBIOLOGY ECOLOGY

Chitin degradation and the temporary response of bacterial chitinolytic communities to chitin amendment in soil under different fertilization regimes

(2019) Cai Hui et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Soil microbial carbon and nutrient constraints are driven more by climate and soil physicochemical properties than by nutrient addition in forest ecosystems

(2019) Xin Jing et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rare microbial taxa as the major drivers of ecosystem multifunctionality in long-term fertilized soils

(2019) Qing-Lin Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Direct measurement of the in situ decomposition of microbial-derived soil organic matter

(2019) Yuntao Hu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Ecological drivers of soil microbial diversity and soil biological networks in the Southern Hemisphere

(2018) Manuel Delgado-Baquerizo et al.   ECOLOGY

Keystone taxa predict compositional change in microbial communities

(2018) Cristina M. Herren et al.   ENVIRONMENTAL MICROBIOLOGY

Wheat rhizosphere harbors a less complex and more stable microbial co-occurrence pattern than bulk soil

(2018) Kunkun Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil bacterial networks are less stable under drought than fungal networks

(2018) Franciska T. de Vries et al.   Nature Communications

Study on the influence of soil microbial community on the long-term heavy metal pollution of different land use types and depth layers in mine

(2018) Xingqing Zhao et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Soil microbial community composition in tallgrass prairie restorations converge with remnants across a 27-year chronosequence

(2017) Nicholas A. Barber et al.   ENVIRONMENTAL MICROBIOLOGY

Depth-resolved microbial community analyses in two contrasting soil cores contaminated by antimony and arsenic

(2017) Enzong Xiao et al.   ENVIRONMENTAL POLLUTION

Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity

(2017) Sigrid Dassen et al.   MOLECULAR ECOLOGY

Bacterial rather than fungal community composition is associated with microbial activities and nutrient-use efficiencies in a paddy soil with short-term organic amendments

(2017) Junjie Guo et al.   PLANT AND SOIL

Taxon abundance, diversity, co-occurrence and network analysis of the ruminal microbiota in response to dietary changes in dairy cows

(2017) Ilma Tapio et al.   PLoS One

Microbial Taxa Distribution Is Associated with Ecological Trophic Cascades along an Elevation Gradient

(2017) Fei Yao et al.   Frontiers in Microbiology

Soil Bacterial Community Structure and Co-occurrence Pattern during Vegetation Restoration in Karst Rocky Desertification Area

(2017) Liang Xue et al.   Frontiers in Microbiology

Microbial regulation of the soil carbon cycle: evidence from gene–enzyme relationships

(2016) Pankaj Trivedi et al.   ISME Journal

Long-term fertilizer and crop-rotation treatments differentially affect soil bacterial community structure

(2016) Chinmay Soman et al.   PLANT AND SOIL

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Networking in the Plant Microbiome

(2016) Marcel G. A. van der Heijden et al.   PLOS BIOLOGY

Comparison of bacterial communities in soil between nematode-infected and nematode-uninfected Pinus massoniana pinewood forest

(2015) Cuie Shi et al.   APPLIED SOIL ECOLOGY

Plant community richness and microbial interactions structure bacterial communities in soil

(2015) Daniel C. Schlatter et al.   ECOLOGY

Contribution of exudates, arbuscular mycorrhizal fungi and litter depositions to the rhizosphere priming effect induced by grassland species

(2015) Tanvir Shahzad et al.   SOIL BIOLOGY & BIOCHEMISTRY

Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters

(2014) Alexandre B. de Menezes et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial community responses to a gradient of alkaline mountaintop mine drainage in Central Appalachian streams

(2014) Raven L Bier et al.   ISME Journal

Identifying Keystone Species in the Human Gut Microbiome from Metagenomic Timeseries Using Sparse Linear Regression

(2014) Charles K. Fisher et al.   PLoS One

The microbial contribution to macroecology

(2014) Albert Barberán   Frontiers in Microbiology

Minimization of oxidative stress in cowpea nodules by the interrelationship between Bradyrhizobium sp. and plant growth-promoting bacteria

(2013) Artenisa Cerqueira Rodrigues et al.   APPLIED SOIL ECOLOGY

Bacterial diversity and community structure along different peat soils in boreal forest

(2013) Hui Sun et al.   APPLIED SOIL ECOLOGY

Acidobacteria from oligotrophic soil from the Cerrado can grow in a wide range of carbon source concentrations

(2013) Virgilio Hipólito Lemos de Castro et al.   CANADIAN JOURNAL OF MICROBIOLOGY

An assessment of microbial communities associated with surface mining-disturbed overburden

(2013) Dominique M. Poncelet et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Temporal variability in soil microbial communities across land-use types

(2013) Christian L Lauber et al.   ISME Journal

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS