Assessment of the CASP14 assembly predictions

Accurate prediction of inter-protein residue–residue contacts for homo-oligomeric protein complexes

(2021) Yumeng Yan et al.   BRIEFINGS IN BIOINFORMATICS

Structural basis of ubiquitination mediated by protein splicing in early Eukarya

(2021) Valerio Chiarini et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Structural basis of assembly and torque transmission of the bacterial flagellar motor

(2021) Jiaxing Tan et al.   CELL

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

(2021) Marc F. Lensink et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Modeling of protein complexes in CASP14 with emphasis on the interaction interface prediction

(2021) Justas Dapkūnas et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Improved protein structure prediction using predicted interresidue orientations

(2020) Jianyi Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Modeling protein interactions and complexes in CAPRI 7 th CAPRI evaluation meeting April 3‐5 EMBL‐EBI, Hinxton UK

(2020) Shoshana J. Wodak et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Crystal structure of the hinge domain of Smchd1 reveals its dimerization mode and nucleic acid–binding residues

(2020) Kelan Chen et al.   Science Signaling

Challenges in protein docking

(2020) Ilya A Vakser   CURRENT OPINION IN STRUCTURAL BIOLOGY

Crystal structure of tomato spotted wilt virus GNreveals a dimer complex formation and evolutionary link to animal-infecting viruses

(2020) Yoav Bahat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A glycoprotein B-neutralizing antibody structure at 2.8 Å uncovers a critical domain for herpesvirus fusion initiation

(2020) Stefan L. Oliver et al.   Nature Communications

Slowly folding surface extension in the prototypic avian hepatitis B virus capsid governs stability

(2020) Cihan Makbul et al.   eLife

Frontiers in Cryo Electron Microscopy of Complex Macromolecular Assemblies

(2019) Jana Ognjenović et al.   Annual Review of Biomedical Engineering

What method to use for protein–protein docking?

(2019) Kathryn A Porter et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Assessment of protein assembly prediction in CASP13

(2019) Dmytro Guzenko et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Critical assessment of methods of protein structure prediction (CASP)—Round XIII

(2019) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment

(2019) Marc F. Lensink et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Developments, applications, and prospects of cryo‐electron microscopy

(2019) Xu Benjin et al.   PROTEIN SCIENCE

Analytical symmetry detection in protein assemblies. I. Cyclic symmetries

(2018) Guillaume Pagès et al.   JOURNAL OF STRUCTURAL BIOLOGY

Analytical symmetry detection in protein assemblies. II. Dihedral and cubic symmetries

(2018) Guillaume Pagès et al.   JOURNAL OF STRUCTURAL BIOLOGY

Automated evaluation of quaternary structures from protein crystals

(2018) Spencer Bliven et al.   PLoS Computational Biology

The challenge of modeling protein assemblies: the CASP12-CAPRI experiment

(2017) Marc F. Lensink et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of protein assembly prediction in CASP12

(2017) Aleix Lafita et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Two classes of protective antibodies against Pseudorabies virus variant glycoprotein B: Implications for vaccine design

(2017) Xiangdong Li et al.   PLoS Pathogens

Modeling complexes of modeled proteins

(2016) Ivan Anishchenko et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Advances in template-based protein docking by utilizing interfaces towards completing structural interactome

(2015) Serena Muratcioglu et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

High-resolution protein–protein docking by global optimization: recent advances and future challenges

(2015) Hahnbeom Park et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Robust and accurate prediction of residue–residue interactions across protein interfaces using evolutionary information

(2014) Sergey Ovchinnikov et al.   eLife

Sequence co-evolution gives 3D contacts and structures of protein complexes

(2014) Thomas A Hopf et al.   eLife

lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests

(2013) Valerio Mariani et al.   BIOINFORMATICS

3.5Å cryoEM Structure of Hepatitis B Virus Core Assembled from Full-Length Core Protein

(2013) Xuekui Yu et al.   PLoS One

Advances in integrative modeling of biomolecular complexes

(2012) Ezgi Karaca et al.   METHODS

How significant is a protein structure similarity with TM-score = 0.5?

(2010) Jinrui Xu et al.   BIOINFORMATICS

Crystal Structure of the Acid-Induced Arginine Decarboxylase fromEscherichia coli: Reversible Decamer Assembly Controls Enzyme Activity

(2009) Juni Andréll et al.   BIOCHEMISTRY