Assessment of protein assembly prediction in CASP13

BioJava 5: A community driven open-source bioinformatics library

(2019) Aleix Lafita et al.   PLoS Computational Biology

Frontiers in Cryo Electron Microscopy of Complex Macromolecular Assemblies

(2019) Jana Ognjenović et al.   Annual Review of Biomedical Engineering

Principles and characteristics of biological assemblies in experimentally determined protein structures

(2019) Qifang Xu et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core

(2018) Lukas Zimmermann et al.   JOURNAL OF MOLECULAR BIOLOGY

InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs

(2018) Chloé Quignot et al.   NUCLEIC ACIDS RESEARCH

SWISS-MODEL: homology modelling of protein structures and complexes

(2018) Andrew Waterhouse et al.   NUCLEIC ACIDS RESEARCH

Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy

(2018) Tadeusz L. Ogorzalek et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Automated evaluation of quaternary structures from protein crystals

(2018) Spencer Bliven et al.   PLoS Computational Biology

The challenge of modeling protein assemblies: the CASP12-CAPRI experiment

(2017) Marc F. Lensink et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Continuous Automated Model EvaluatiOn (CAMEO) complementing the critical assessment of structure prediction in CASP12

(2017) Jürgen Haas et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of protein assembly prediction in CASP12

(2017) Aleix Lafita et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of hard target modeling in CASP12 reveals an emerging role of alignment-based contact prediction methods

(2017) Luciano A. Abriata et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Critical assessment of methods of protein structure prediction (CASP)-Round XII

(2017) John Moult et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of contact predictions in CASP12: Co-evolution and deep learning coming of age

(2017) Joerg Schaarschmidt et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology

(2017) Martino Bertoni et al.   Scientific Reports

Understanding the fabric of protein crystals: computational classification of biological interfaces and crystal contacts

(2015) Guido Capitani et al.   BIOINFORMATICS

Stock-based detection of protein oligomeric states in jsPISA

(2015) Eugene Krissinel   NUCLEIC ACIDS RESEARCH

The Resolution Revolution

(2014) W. Kuhlbrandt   SCIENCE

Robust and accurate prediction of residue–residue interactions across protein interfaces using evolutionary information

(2014) Sergey Ovchinnikov et al.   eLife

Sequence co-evolution gives 3D contacts and structures of protein complexes

(2014) Thomas A Hopf et al.   eLife

lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests

(2013) Valerio Mariani et al.   BIOINFORMATICS

Dynamic dissociating homo-oligomers and the control of protein function

(2011) Trevor Selwood et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Assessment of template based protein structure predictions in CASP9

(2011) Valerio Mariani et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Optimal contact definition for reconstruction of Contact Maps

(2010) Jose M Duarte et al.   BMC BIOINFORMATICS

Mechanisms of protein oligomerization, the critical role of insertions and deletions in maintaining different oligomeric states

(2010) K. Hashimoto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evaluation of template-based models in CASP8 with standard measures

(2009) Domenico Cozzetto et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Defining an Essence of Structure Determining Residue Contacts in Proteins

(2009) R. Sathyapriya et al.   PLoS Computational Biology