Sequence co-evolution gives 3D contacts and structures of protein complexes
Published 2014 View Full Article
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Title
Sequence co-evolution gives 3D contacts and structures of protein complexes
Authors
Keywords
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Journal
eLife
Volume 3, Issue -, Pages -
Publisher
eLife Sciences Publications, Ltd
Online
2014-09-25
DOI
10.7554/elife.03430
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- (2014) Jessica Andreani et al. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
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- (2013) John E. Walker BIOCHEMICAL SOCIETY TRANSACTIONS
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- Activities at the Universal Protein Resource (UniProt)
- (2013) NUCLEIC ACIDS RESEARCH
- Improved contact prediction in proteins: Using pseudolikelihoods to infer Potts models
- (2013) Magnus Ekeberg et al. PHYSICAL REVIEW E
- Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era
- (2013) H. Kamisetty et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Defining the limits of homology modeling in information-driven protein docking
- (2013) J. P. G. L. M. Rodrigues et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
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- (2012) Dina Schneidman-Duhovny et al. BIOINFORMATICS
- Three-Dimensional Structures of Membrane Proteins from Genomic Sequencing
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- (2012) T. Nugent et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Assembly of macromolecular complexes by satisfaction of spatial restraints from electron microscopy images
- (2012) J. Velazquez-Muriel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Arrangement of subunits in intact mammalian mitochondrial ATP synthase determined by cryo-EM
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- (2011) David T. Jones et al. BIOINFORMATICS
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- Protein 3D Structure Computed from Evolutionary Sequence Variation
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- (2011) F. Morcos et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Inward facing conformations of the MetNI methionine ABC transporter: Implications for the mechanism of transinhibition
- (2011) Eric Johnson et al. PROTEIN SCIENCE
- Hidden Markov model speed heuristic and iterative HMM search procedure
- (2010) L Steven Johnson et al. BMC BIOINFORMATICS
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- (2010) Sivaraman Balakrishnan et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
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- (2009) Georgii G. Krivov et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
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- (2008) M. Weigt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The High-Affinity E. coli Methionine ABC Transporter: Structure and Allosteric Regulation
- (2008) N. S. Kadaba et al. SCIENCE
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