Quantitative Proteome and PTMome Analysis of Arabidopsis thaliana Root Responses to Persistent Osmotic and Salinity Stress

Hydrogen peroxide sensor HPCA1 is an LRR receptor kinase in Arabidopsis

(2020) Feihua Wu et al.   NATURE

Arabidopsis thaliana trehalose-6-phosphate phosphatase gene TPPI enhances drought tolerance by regulating stomatal apertures

(2020) Qingfang Lin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mass-spectrometry-based draft of the Arabidopsis proteome

(2020) Julia Mergner et al.   NATURE

Comparative acetylome analysis of wild-type and fuzzless-lintless mutant ovules of upland cotton (Gossypium hirsutum Cv. Xu142) unveils differential protein acetylation may regulate fiber development

(2020) Prashant Kumar Singh et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

CDKD-dependent activation of CDKA;1 controls microtubule dynamics and cytokinesis during meiosis

(2020) Kostika Sofroni et al.   JOURNAL OF CELL BIOLOGY

Dual lysine and N‐terminal acetyltransferases reveal the complexity underpinning protein acetylation

(2020) Willy V Bienvenut et al.   Molecular Systems Biology

The Arabidopsis N α ‐acetyltransferase NAA60 locates to the plasma membrane and is vital for the high salt stress response

(2020) Eric Linster et al.   NEW PHYTOLOGIST

Arabidopsis ABF3 and ABF4 Transcription Factors Act with the NF-YC Complex to Regulate SOC1 Expression and Mediate Drought-Accelerated Flowering

(2019) Keumbi Hwang et al.   Molecular Plant

Diurnal changes in concerted plant protein phosphorylation and acetylation in Arabidopsis organs and seedlings

(2019) R. Glen Uhrig et al.   PLANT JOURNAL

Transcriptome analysis reveals regulatory framework for salt and osmotic tolerance in a succulent xerophyte

(2019) Hongju Yin et al.   BMC PLANT BIOLOGY

The Plant PTM Viewer, a central resource for exploring plant protein modifications

(2019) Patrick Willems et al.   PLANT JOURNAL

Trehalose protects Escherichia coli against carbon stress manifested by protein acetylation and aggregation

(2019) María Moruno Algara et al.   MOLECULAR MICROBIOLOGY

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Overexpression of the trehalose-6-phosphate phosphatase family gene AtTPPF improves the drought tolerance of Arabidopsis thaliana

(2019) Qingfang Lin et al.   BMC PLANT BIOLOGY

Arabidopsis CPK6 positively regulates ABA signaling and drought tolerance through phosphorylating ABA-responsive element binding factors

(2019) Hanfeng Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Establishment of Dimethyl Labeling-based Quantitative Acetylproteomics in Arabidopsis

(2018) Shichang Liu et al.   MOLECULAR & CELLULAR PROTEOMICS

Integrative Regulation of Drought Escape through ABA-Dependent and -Independent Pathways in Rice

(2018) Hao Du et al.   Molecular Plant

Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism

(2018) Daniel D Seaton et al.   Molecular Systems Biology

Oxidative stress-triggered interactions between the succinyl- and acetyl-proteomes of rice leaves

(2018) Heng Zhou et al.   PLANT CELL AND ENVIRONMENT

Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions

(2018) V. C. Dilukshi Fernando et al.   PLANT MOLECULAR BIOLOGY

Freshwater salinization syndrome on a continental scale

(2018) Sujay S. Kaushal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global Proteome Analysis Links Lysine Acetylation to Diverse Functions in Oryza Sativa

(2018) Chao Xue et al.   PROTEOMICS

Ran GTPase, an eukaryotic gene novelty, is involved in amphioxus mitosis

(2018) Ugo Coppola et al.   PLoS One

Comprehensive proteome analyses of lysine acetylation in tea leaves by sensing nitrogen nutrition

(2018) Jutang Jiang et al.   BMC GENOMICS

Sulfate is incorporated into cysteine to trigger ABA production and stomata closure

(2018) Sundas Batool et al.   PLANT CELL

Calcium-dependent protein kinase CPK9 negatively functions in stomatal abscisic acid signaling by regulating ion channel activity in Arabidopsis

(2018) Dong-Hua Chen et al.   PLANT MOLECULAR BIOLOGY

Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in Arabidopsis

(2017) Markus Hartl et al.   Molecular Systems Biology

Global patterns of drought recovery

(2017) Christopher R. Schwalm et al.   NATURE

Ectopic expression of two AREB/ABF orthologs increases drought tolerance in cotton (Gossypium hirsutum )

(2017) Tyson C. C. Kerr et al.   PLANT CELL AND ENVIRONMENT

Proteomic analysis of lysine acetylation provides strong evidence for involvement of acetylated proteins in plant meiosis and tapetum function

(2017) Xiaojing Li et al.   PLANT JOURNAL

Fungal-induced protein hyperacetylation in maize identified by acetylome profiling

(2017) Justin W. Walley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Parallel analysis ofArabidopsiscircadian clock mutants reveals different scales of transcriptome and proteome regulation

(2017) Alexander Graf et al.   Open Biology

Early Flowering as a Drought Escape Mechanism in Plants: How Can It Aid Wheat Production?

(2017) Yuri Shavrukov et al.   Frontiers in Plant Science

Potential involvement of drought-induced Ran GTPaseCLRan1in root growth enhancement in a xerophyte wild watermelon

(2016) Kinya Akashi et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Abiotic Stress Signaling and Responses in Plants

(2016) Jian-Kang Zhu   CELL

ABA-dependent control ofGIGANTEAsignalling enables drought escape via up-regulation ofFLOWERING LOCUS TinArabidopsis thaliana

(2016) Matteo Riboni et al.   JOURNAL OF EXPERIMENTAL BOTANY

Root spatial metabolite profiling of two genotypes of barley(Hordeum vulgareL.) reveals differences in response to short-term salt stress

(2016) Megan C. Shelden et al.   JOURNAL OF EXPERIMENTAL BOTANY

Expression and characterization of the SOS1 Arabidopsis salt tolerance protein

(2016) Asad Ullah et al.   MOLECULAR AND CELLULAR BIOCHEMISTRY

The Perseus computational platform for comprehensive analysis of (prote)omics data

(2016) Stefka Tyanova et al.   NATURE METHODS

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

(2016) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Meta-analysis and meta-regression of transcriptomic responses to water stress in Arabidopsis

(2016) Joshua S. Rest et al.   PLANT JOURNAL

A Tale of Two Sugars: Trehalose 6-Phosphate and Sucrose

(2016) Carlos M. Figueroa et al.   PLANT PHYSIOLOGY

kmlShape: An Efficient Method to Cluster Longitudinal Data (Time-Series) According to Their Shapes

(2016) Christophe Genolini et al.   PLoS One

Advances in crop proteomics: PTMs of proteins under abiotic stress

(2016) Xiaolin Wu et al.   PROTEOMICS

Osmotic stress induces genes, enzymes and accumulation of galactinol, raffinose and stachyose in seedlings of pea (Pisum sativum L.)

(2015) Wioletta E. Pluskota et al.   ACTA PHYSIOLOGIAE PLANTARUM

UDP-glucose pyrophosphorylase Ugp1 is involved in oxidative stress response and long-term survival during stationary phase in Saccharomyces cerevisiae

(2015) Dae-Gwan Yi et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

A plant U-box protein, PUB4, regulates asymmetric cell division and cell proliferation in the root meristem

(2015) A. Kinoshita et al.   DEVELOPMENT

Comparative Proteomic Analysis of Brassica napus in Response to Drought Stress

(2015) Jin Koh et al.   JOURNAL OF PROTEOME RESEARCH

The evolution of drought escape and avoidance in natural herbaceous populations

(2015) Nicholas J. Kooyers   PLANT SCIENCE

Small GTP-binding protein Ran is regulated by posttranslational lysine acetylation

(2015) Susanne de Boor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Downregulation of N-terminal acetylation triggers ABA-mediated drought responses in Arabidopsis

(2015) Eric Linster et al.   Nature Communications

Elucidation of Cross-Talk and Specificity of Early Response Mechanisms to Salt and PEG-Simulated Drought Stresses in Brassica napus Using Comparative Proteomic Analysis

(2015) Junling Luo et al.   PLoS One

SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome

(2014) Cornelia M. Hooper et al.   BIOINFORMATICS

Tudor-SN, a component of stress granules, regulates growth under salt stress by modulating GA20ox3 mRNA levels in Arabidopsis

(2014) Chunxia Yan et al.   JOURNAL OF EXPERIMENTAL BOTANY

HDG11 upregulates cell-wall-loosening protein genes to promote root elongation in Arabidopsis

(2014) Ping Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

FourArabidopsis AREB/ABF transcription factors function predominantly in gene expression downstream of SnRK2 kinases in abscisic acid signalling in response to osmotic stress

(2014) TAKUYA YOSHIDA et al.   PLANT CELL AND ENVIRONMENT

Global Analysis of Lysine Acetylation Suggests the Involvement of Protein Acetylation in Diverse Biological Processes in Rice (Oryza sativa)

(2014) Babi Ramesh Reddy Nallamilli et al.   PLoS One

Is Lys-Nɛ-acetylation the next big thing in post-translational modifications?

(2014) R. Shyama Prasad Rao et al.   TRENDS IN PLANT SCIENCE

Ultradeep Human Phosphoproteome Reveals a Distinct Regulatory Nature of Tyr and Ser/Thr-Based Signaling

(2014) Kirti Sharma et al.   Cell Reports

Direct and indirect selection on flowering time, water-use efficiency (WUE,δ13C), and WUE plasticity to drought inArabidopsis thaliana

(2014) Amanda M. Kenney et al.   Ecology and Evolution

Abiotic stress responses in plant roots: a proteomics perspective

(2014) Dipanjana Ghosh et al.   Frontiers in Plant Science

Initial description of the developing soybean seed protein Lys-Nε-acetylome

(2013) Colin L. Smith-Hammond et al.   Journal of Proteomics

Coordinated Post-translational Responses of Aquaporins to Abiotic and Nutritional Stimuli inArabidopsisRoots

(2013) Magali di Pietro et al.   MOLECULAR & CELLULAR PROTEOMICS

Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions

(2013) Yusaku Uga et al.   NATURE GENETICS

Physiological aspects of raffinose family oligosaccharides in plants: protection against abiotic stress

(2013) A. I. ElSayed et al.   PLANT BIOLOGY

An Arabidopsis homolog of importin β1 is required for ABA response and drought tolerance

(2013) Yanjie Luo et al.   PLANT JOURNAL

ABA and the ubiquitin E3 ligase KEEP ON GOING affect proteolysis of theArabidopsis thalianatranscription factors ABF1 and ABF3

(2013) Yi-Tze Chen et al.   PLANT JOURNAL

Sulfate availability affects ABA levels and germination response to ABA and salt stress inArabidopsis thaliana

(2013) Min-Jie Cao et al.   PLANT JOURNAL

Proteomics reveals evidence of cross-talk between protein modifications in bacteria: focus on acetylation and phosphorylation

(2012) Boumediene Soufi et al.   CURRENT OPINION IN MICROBIOLOGY

Proteome-wide Analysis of Lysine Acetylation Suggests its Broad Regulatory Scope inSaccharomyces cerevisiae

(2012) Peter Henriksen et al.   MOLECULAR & CELLULAR PROTEOMICS

The Patatin-Containing Phospholipase A pPLAIIα Modulates Oxylipin Formation and Water Loss in Arabidopsis thaliana

(2012) Wen-Yu Yang et al.   Molecular Plant

How Do Sugars Regulate Plant Growth and Development? New Insight into the Role of Trehalose-6-Phosphate

(2012) Liam E. O’Hara et al.   Molecular Plant

Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit

(2012) Katja Baerenfaller et al.   Molecular Systems Biology

The Arabidopsis ARCP Protein, CSI1, Which Is Required for Microtubule Stability, Is Necessary for Root and Anther Development

(2012) Y. Mei et al.   PLANT CELL

Arabidopsis thaliana histone deacetylase 14 (HDA14) is an α-tubulin deacetylase that associates with PP2A and enriches in the microtubule fraction with the putative histone acetyltransferase ELP3

(2012) Hue T. Tran et al.   PLANT JOURNAL

The protein expression landscape of the Arabidopsis root

(2012) J. J. Petricka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soluble carbohydrates in legume seeds

(2012) Ralph L. Obendorf et al.   SEED SCIENCE RESEARCH

Balancing metabolites in drought: the sulfur assimilation conundrum

(2012) Kai Xun Chan et al.   TRENDS IN PLANT SCIENCE

Sulfur Assimilation in Photosynthetic Organisms: Molecular Functions and Regulations of Transporters and Assimilatory Enzymes

(2011) Hideki Takahashi et al.   Annual Review of Plant Biology

Drought, metabolites, and Arabidopsis natural variation: a promising combination for understanding adaptation to water-limited environments

(2011) Paul E Verslues et al.   CURRENT OPINION IN PLANT BIOLOGY

Mechanisms of Plant Salt Response: Insights from Proteomics

(2011) Heng Zhang et al.   JOURNAL OF PROTEOME RESEARCH

SnRK2 Protein Kinases—Key Regulators of Plant Response to Abiotic Stresses

(2011) Anna Kulik et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Proteins of Diverse Function and Subcellular Location Are Lysine Acetylated in Arabidopsis

(2011) I. Finkemeier et al.   PLANT PHYSIOLOGY

Lysine Acetylation Is a Widespread Protein Modification for Diverse Proteins in Arabidopsis

(2011) X. Wu et al.   PLANT PHYSIOLOGY

Activation of the plasma membrane Na/H antiporter Salt-Overly-Sensitive 1 (SOS1) by phosphorylation of an auto-inhibitory C-terminal domain

(2011) F. J. Quintero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteome-Wide Mapping of the Drosophila Acetylome Demonstrates a High Degree of Conservation of Lysine Acetylation

(2011) B. T. Weinert et al.   Science Signaling

Regulation of Sulfate Uptake and Assimilation—the Same or Not the Same?

(2010) Jean-Claude Davidian et al.   Molecular Plant

The RNA Binding Protein Tudor-SN Is Essential for Stress Tolerance and Stabilizes Levels of Stress-Responsive mRNAs Encoding Secreted Proteins in Arabidopsis

(2010) N. F. dit Frey et al.   PLANT CELL

The Arabidopsis ABA-Activated Kinase OST1 Phosphorylates the bZIP Transcription Factor ABF3 and Creates a 14-3-3 Binding Site Involved in Its Turnover

(2010) Caroline Sirichandra et al.   PLoS One

Regulation of Cellular Metabolism by Protein Lysine Acetylation

(2010) S. Zhao et al.   SCIENCE

Improving salinity tolerance of plants through conventional breeding and genetic engineering: An analytical comparison

(2009) Muhammad Ashraf et al.   BIOTECHNOLOGY ADVANCES

In vitro reconstitution of an abscisic acid signalling pathway

(2009) Hiroaki Fujii et al.   NATURE

UDP-Glucose Pyrophosphorylase is not Rate Limiting, but is Essential in Arabidopsis

(2009) M. Meng et al.   PLANT AND CELL PHYSIOLOGY

The Arabidopsis cyclin-dependent kinase-activating kinase CDKF;1 is a major regulator of cell proliferation and cell expansion but is dispensable for CDKA activation

(2009) Hirotomo Takatsuka et al.   PLANT JOURNAL

Large-Scale Arabidopsis Phosphoproteome Profiling Reveals Novel Chloroplast Kinase Substrates and Phosphorylation Networks

(2009) S. Reiland et al.   PLANT PHYSIOLOGY

Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions

(2009) C. Choudhary et al.   SCIENCE

Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration

(2008) S. Bauer et al.   BIOINFORMATICS

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Spatial and temporal coordination of mitosis by Ran GTPase

(2008) Paul R. Clarke et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Complex Signaling Network in Regulation of Adenosine 5'-Phosphosulfate Reductase by Salt Stress in Arabidopsis Roots

(2008) A. Koprivova et al.   PLANT PHYSIOLOGY