Meta-analysis and meta-regression of transcriptomic responses to water stress in Arabidopsis

Bias and correction for the log response ratio in ecological meta-analysis

(2015) Marc J. Lajeunesse   ECOLOGY

Conducting Meta-Analyses inRwith themetaforPackage

(2015) Wolfgang Viechtbauer   Journal of Statistical Software

Uses and misuses of meta-analysis in plant ecology

(2014) Julia Koricheva et al.   JOURNAL OF ECOLOGY

GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response

(2014) Rim Zaag et al.   NUCLEIC ACIDS RESEARCH

Meta-Analysis of Gene Expression Signatures Reveals Hidden Links among Diverse Biological Processes in Arabidopsis

(2014) Liming Lai et al.   PLoS One

Basic Helix-Loop-Helix Transcription Factors JASMONATE-ASSOCIATED MYC2-LIKE1 (JAM1), JAM2, and JAM3 Are Negative Regulators of Jasmonate Responses in Arabidopsis

(2013) Y. Sasaki-Sekimoto et al.   PLANT PHYSIOLOGY

Identification of Cytokinin-Responsive Genes Using Microarray Meta-Analysis and RNA-Seq in Arabidopsis

(2013) A. Bhargava et al.   PLANT PHYSIOLOGY

Genes and Co-Expression Modules Common to Drought and Bacterial Stress Responses in Arabidopsis and Rice

(2013) Rafi Shaik et al.   PLoS One

Methodological issues and advances in biological meta-analysis

(2012) Shinichi Nakagawa et al.   EVOLUTIONARY ECOLOGY

Comprehensive literature review and statistical considerations for microarray meta-analysis

(2012) George C. Tseng et al.   NUCLEIC ACIDS RESEARCH

Unique Drought Resistance Functions of the Highly ABA-Induced Clade A Protein Phosphatase 2Cs

(2012) G. B. Bhaskara et al.   PLANT PHYSIOLOGY

Functional roles of the protein phosphatase 2C, AtAIP1, in abscisic acid signaling and sugar tolerance in Arabidopsis

(2012) Chae Woo Lim et al.   PLANT SCIENCE

A Meta-Analysis Reveals the Commonalities and Differences in Arabidopsis thaliana Response to Different Viral Pathogens

(2012) Guillermo Rodrigo et al.   PLoS One

A generalized weighting regression-derived meta-analysis estimator robust to small-study effects and heterogeneity

(2012) Santiago G. Moreno et al.   STATISTICS IN MEDICINE

Comparative analysis of microarray data in Arabidopsis transcriptome during compatible interactions with plant viruses

(2012) Olga A Postnikova et al.   Virology Journal

Comparison of lists of genes based on functional profiles

(2011) Miquel Salicrú et al.   BMC BIOINFORMATICS

Sentinel lymph node biopsy in endometrial cancer: Meta-analysis of 26 studies

(2011) Sokbom Kang et al.   GYNECOLOGIC ONCOLOGY

ABA-mediated transcriptional regulation in response to osmotic stress in plants

(2011) Yasunari Fujita et al.   JOURNAL OF PLANT RESEARCH

Removing Batch Effects in Analysis of Expression Microarray Data: An Evaluation of Six Batch Adjustment Methods

(2011) Chao Chen et al.   PLoS One

Statistical Design and Analysis of RNA Sequencing Data

(2010) P. L. Auer et al.   GENETICS

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Time of day shapes Arabidopsis drought transcriptomes

(2010) Olivia Wilkins et al.   PLANT JOURNAL

Robust variance estimation in meta-regression with dependent effect size estimates

(2010) Larry V. Hedges et al.   Research Synthesis Methods

Signal advance for abscisic acid

(2009) Laura B. Sheard et al.   NATURE

Genotype and time of day shape thePopulusdrought response

(2009) Olivia Wilkins et al.   PLANT JOURNAL

Emerging connections in the ethylene signaling network

(2009) Sang-Dong Yoo et al.   TRENDS IN PLANT SCIENCE

A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments

(2008) Fangxin Hong et al.   BIOINFORMATICS

Meta-analysis of genome-wide expression patterns associated with behavioral maturation in honey bees

(2008) Heather A Adams et al.   BMC GENOMICS

Reproducible and reliable microarray results through quality control: good laboratory proficiency and appropriate data analysis practices are essential

(2008) Leming Shi et al.   CURRENT OPINION IN BIOTECHNOLOGY

Theeer5mutation, which affects a novel proteasome-related subunit, indicates a prominent role for the COP9 signalosome in resetting the ethylene-signaling pathway in Arabidopsis

(2008) Matthew J. Christians et al.   PLANT JOURNAL

Chemical root to shoot signaling under drought

(2008) Daniel P. Schachtman et al.   TRENDS IN PLANT SCIENCE

Key Issues in Conducting a Meta-Analysis of Gene Expression Microarray Datasets

(2008) Adaikalavan Ramasamy et al.   PLOS MEDICINE