Single molecule/particle tracking analysis program SMTracker 2.0 reveals different dynamics of proteins within the RNA degradosome complex in Bacillus subtilis

The Bacillus subtilis dCMP deaminase ComEB acts as a dynamic polar localization factor for ComGA within the competence machinery

(2020) Marie Burghard‐Schrod et al.   MOLECULAR MICROBIOLOGY

Dynamic Membrane Localization of RNase Y in Bacillus subtilis

(2020) Lina Hamouche et al.   mBio

Cyclic di-GMP Signaling in Bacillus subtilis Is Governed by Direct Interactions of Diguanylate Cyclases and Cognate Receptors

(2020) Sandra Kunz et al.   mBio

Super-Resolution Microscopy and Single-Molecule Tracking Reveal Distinct Adaptive Dynamics of MreB and of Cell Wall-Synthesis Enzymes

(2020) Simon Dersch et al.   Frontiers in Microbiology

Symmetric activity of DNA polymerases at and recruitment of exonuclease ExoR and of PolA to the Bacillus subtilis replication forks

(2019) Rogelio Hernández-Tamayo et al.   NUCLEIC ACIDS RESEARCH

The ultimate picture — the combination of live cell superresolution microscopy and single molecule tracking yields highest spatio-temporal resolution

(2018) Simon Dersch et al.   CURRENT OPINION IN MICROBIOLOGY

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

Maturation of polycistronic mRNAs by the endoribonuclease RNase Y and its associated Y-complex inBacillus subtilis

(2018) Aaron DeLoughery et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

HybTrack: A hybrid single particle tracking software using manual and automatic detection of dim signals

(2018) Byung Hun Lee et al.   Scientific Reports

Robust model-based analysis of single-particle tracking experiments with Spot-On

(2018) Anders S Hansen et al.   eLife

Microdomain formation is a general property of bacterial membrane proteins and induces heterogeneity of diffusion patterns

(2018) Daniella Lucena et al.   BMC BIOLOGY

SMTracker: a tool for quantitative analysis, exploration and visualization of single-molecule tracking data reveals highly dynamic binding of B. subtilis global repressor AbrB throughout the genome

(2018) Thomas C. Rösch et al.   Scientific Reports

Single molecule tracking reveals spatio-temporal dynamics of bacterial DNA repair centres

(2018) Thomas C. Rösch et al.   Scientific Reports

Rapid turnover of DnaA at replication origin regions contributes to initiation control of DNA replication

(2017) Katrin Schenk et al.   PLoS Genetics

Construction and Analysis of Two Genome-Scale Deletion Libraries for Bacillus subtilis

(2017) Byoung-Mo Koo et al.   Cell Systems

Regulation of mRNA Decay in Bacteria

(2016) Bijoy K. Mohanty et al.   Annual Review of Microbiology

Interaction ofBacillus subtilisPolynucleotide Phosphorylase and RNase Y

(2016) Elizabeth Salvo et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Stochastic activation of a DNA damage response causes cell-to-cell mutation rate variation

(2016) S. Uphoff et al.   SCIENCE

Localization of Components of the RNA-Degrading Machine in Bacillus subtilis

(2016) Nora Cascante-Estepa et al.   Frontiers in Microbiology

Biofilm formation byBacillus subtilisrequires an endoribonuclease-containing multisubunit complex that controls mRNA levels for the matrix gene repressor SinR

(2015) Aaron DeLoughery et al.   MOLECULAR MICROBIOLOGY

Oufti: an integrated software package for high-accuracy, high-throughput quantitative microscopy analysis

(2015) Ahmad Paintdakhi et al.   MOLECULAR MICROBIOLOGY

The ImageJ ecosystem: An open platform for biomedical image analysis

(2015) Johannes Schindelin et al.   MOLECULAR REPRODUCTION AND DEVELOPMENT

Quantitative evaluation of software packages for single-molecule localization microscopy

(2015) Daniel Sage et al.   NATURE METHODS

Membrane Recognition and Dynamics of the RNA Degradosome

(2015) Henrik Strahl et al.   PLoS Genetics

Messenger RNA Degradation in Bacterial Cells

(2014) Monica P. Hui et al.   Annual Review of Genetics

Comprehensive Absolute Quantification of the Cytosolic Proteome ofBacillus subtilisby Data Independent, Parallel Fragmentation in Liquid Chromatography/Mass Spectrometry (LC/MSE)

(2014) Jan Muntel et al.   MOLECULAR & CELLULAR PROTEOMICS

Single-particle tracking reveals that free ribosomal subunits are not excluded from the Escherichia coli nucleoid

(2014) A. Sanamrad et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The social fabric of the RNA degradosome

(2013) Katarzyna J. Bandyra et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Bacillus subtilis Mutants with Knockouts of the Genes Encoding Ribonucleases RNase Y and RNase J1 Are Viable, with Major Defects in Cell Morphology, Sporulation, and Competence

(2013) S. Figaro et al.   JOURNAL OF BACTERIOLOGY

Extracting intracellular diffusive states and transition rates from single-molecule tracking data

(2013) Fredrik Persson et al.   NATURE METHODS

RNA degradation in Bacillus subtilis: an interplay of essential endo- and exoribonucleases

(2012) Martin Lehnik-Habrink et al.   MOLECULAR MICROBIOLOGY

Three Essential Ribonucleases—RNase Y, J1, and III—Control the Abundance of a Majority of Bacillus subtilis mRNAs

(2012) Sylvain Durand et al.   PLoS Genetics

RNase Y in Bacillus subtilis: a Natively Disordered Protein That Is the Functional Equivalent of RNase E from Escherichia coli

(2011) M. Lehnik-Habrink et al.   JOURNAL OF BACTERIOLOGY

RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y

(2011) Martin Lehnik-Habrink et al.   MOLECULAR MICROBIOLOGY

RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis

(2009) Karen Shahbabian et al.   EMBO JOURNAL

Novel Activities of Glycolytic Enzymes inBacillus subtilis

(2009) Fabian M. Commichau et al.   MOLECULAR & CELLULAR PROTEOMICS

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

Robust single-particle tracking in live-cell time-lapse sequences

(2008) Khuloud Jaqaman et al.   NATURE METHODS