Cyclic di-GMP Signaling in Bacillus subtilis Is Governed by Direct Interactions of Diguanylate Cyclases and Cognate Receptors

ParB-type DNA Segregation Proteins Are CTP-Dependent Molecular Switches

(2019) Manuel Osorio-Valeriano et al.   CELL

SWISS-MODEL: homology modelling of protein structures and complexes

(2018) Andrew Waterhouse et al.   NUCLEIC ACIDS RESEARCH

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

Microdomain formation is a general property of bacterial membrane proteins and induces heterogeneity of diffusion patterns

(2018) Daniella Lucena et al.   BMC BIOLOGY

Making and breaking of an essential poison: the cyclases and phosphodiesterases that produce and degrade the essential second messenger cyclic di-AMP in bacteria

(2018) Fabian M. Commichau et al.   JOURNAL OF BACTERIOLOGY

SMTracker: a tool for quantitative analysis, exploration and visualization of single-molecule tracking data reveals highly dynamic binding of B. subtilis global repressor AbrB throughout the genome

(2018) Thomas C. Rösch et al.   Scientific Reports

Single molecule tracking reveals spatio-temporal dynamics of bacterial DNA repair centres

(2018) Thomas C. Rösch et al.   Scientific Reports

Cyclic di-GMP: second messenger extraordinaire

(2017) Urs Jenal et al.   NATURE REVIEWS MICROBIOLOGY

MotI (DgrA) acts as a molecular clutch on the flagellar stator protein MotA inBacillus subtilis

(2017) Sundharraman Subramanian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Subcellular clustering of a putative c-di-GMP-dependent exopolysaccharide machinery affecting macro colony architecture in B acillus subtilis

(2017) Patricia Bedrunka et al.   Environmental Microbiology Reports

More than Enzymes That Make or Break Cyclic Di-GMP—Local Signaling in the Interactome of GGDEF/EAL Domain Proteins of Escherichia coli

(2017) Olga Sarenko et al.   mBio

Rapid turnover of DnaA at replication origin regions contributes to initiation control of DNA replication

(2017) Katrin Schenk et al.   PLoS Genetics

New Functions and Subcellular Localization Patterns of c-di-GMP Components (GGDEF Domain Proteins) in B. subtilis

(2017) Patricia Bedrunka et al.   Frontiers in Microbiology

Long-range allosteric signaling in red light–regulated diguanylyl cyclases

(2017) Geoffrey Gourinchas et al.   Science Advances

Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology

(2017) Martino Bertoni et al.   Scientific Reports

MEMHDX: An interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets

(2016) Véronique Hourdel et al.   BIOINFORMATICS

The SWISS-MODEL Repository—new features and functionality

(2016) Stefan Bienert et al.   NUCLEIC ACIDS RESEARCH

Oufti: an integrated software package for high-accuracy, high-throughput quantitative microscopy analysis

(2015) Ahmad Paintdakhi et al.   MOLECULAR MICROBIOLOGY

Contribution of Physical Interactions to Signaling Specificity between a Diguanylate Cyclase and Its Effector

(2015) Kurt M. Dahlstrom et al.   mBio

Novel tricks played by the second messenger c-di-GMP in bacterial biofilm formation

(2013) Regine Hengge   EMBO JOURNAL

The EAL domain protein YciR acts as a trigger enzyme in a c-di-GMP signalling cascade in E. coli biofilm control

(2013) Sandra Lindenberg et al.   EMBO JOURNAL

Functional Characterization of Core Components of the Bacillus subtilis Cyclic-Di-GMP Signaling Pathway

(2013) X. Gao et al.   JOURNAL OF BACTERIOLOGY

Plasmid-Encoded ComI Inhibits Competence in the Ancestral 3610 Strain of Bacillus subtilis

(2013) M. A. Konkol et al.   JOURNAL OF BACTERIOLOGY

Evidence for Cyclic Di-GMP-Mediated Signaling in Bacillus subtilis

(2012) Yun Chen et al.   JOURNAL OF BACTERIOLOGY

Structures of the PelD Cyclic Diguanylate Effector Involved in Pellicle Formation inPseudomonas aeruginosaPAO1

(2012) Zhi Li et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The cell biology of peritrichous flagella inBacillus subtilis

(2012) Sarah B. Guttenplan et al.   MOLECULAR MICROBIOLOGY

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Localized cell death focuses mechanical forces during 3D patterning in a biofilm

(2012) M. Asally et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In Vivo Architecture and Action of Bacterial Structural Maintenance of Chromosome Proteins

(2012) A. Badrinarayanan et al.   SCIENCE

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

(2012) P. Nicolas et al.   SCIENCE

Counting protein molecules using quantitative fluorescence microscopy

(2012) Valerie C. Coffman et al.   TRENDS IN BIOCHEMICAL SCIENCES

CENP-A exceeds microtubule attachment sites in centromere clusters of both budding and fission yeast

(2011) Valerie C. Coffman et al.   JOURNAL OF CELL BIOLOGY

Toward the estimation of the absolute quality of individual protein structure models

(2010) Pascal Benkert et al.   BIOINFORMATICS

Automated comparative protein structure modeling with SWISS-MODEL and Swiss-PdbViewer: A historical perspective

(2010) Nicolas Guex et al.   ELECTROPHORESIS

Laboratory Strains of Bacillus subtilis Do Not Exhibit Swarming Motility

(2009) J. E. Patrick et al.   JOURNAL OF BACTERIOLOGY

Robust single-particle tracking in live-cell time-lapse sequences

(2008) Khuloud Jaqaman et al.   NATURE METHODS