SMTracker: a tool for quantitative analysis, exploration and visualization of single-molecule tracking data reveals highly dynamic binding of B. subtilis global repressor AbrB throughout the genome

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

Microdomain formation is a general property of bacterial membrane proteins and induces heterogeneity of diffusion patterns

(2018) Daniella Lucena et al.   BMC BIOLOGY

TrackMate: An open and extensible platform for single-particle tracking

(2017) Jean-Yves Tinevez et al.   METHODS

Diatrack particle tracking software: Review of applications and performance evaluation

(2017) Pascal Vallotton et al.   TRAFFIC

Rapid turnover of DnaA at replication origin regions contributes to initiation control of DNA replication

(2017) Katrin Schenk et al.   PLoS Genetics

Single-molecule dynamics of the molecular chaperone trigger factor in living cells

(2016) Feng Yang et al.   MOLECULAR MICROBIOLOGY

Single-molecule imaging of UvrA and UvrB recruitment to DNA lesions in living Escherichia coli

(2016) Mathew Stracy et al.   Nature Communications

Effects of amino acid starvation on RelA diffusive behavior in liveEscherichia coli

(2015) Wenting Li et al.   MOLECULAR MICROBIOLOGY

Oufti: an integrated software package for high-accuracy, high-throughput quantitative microscopy analysis

(2015) Ahmad Paintdakhi et al.   MOLECULAR MICROBIOLOGY

InferenceMAP: mapping of single-molecule dynamics with Bayesian inference

(2015) Mohamed El Beheiry et al.   NATURE METHODS

Single-molecule motions and interactions in live cells reveal target search dynamics in mismatch repair

(2015) Yi Liao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid

(2015) Mathew Stracy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A review of progress in single particle tracking: from methods to biophysical insights

(2015) Carlo Manzo et al.   REPORTS ON PROGRESS IN PHYSICS

The Localization and Action of Topoisomerase IV in Escherichia coli Chromosome Segregation Is Coordinated by the SMC Complex, MukBEF

(2015) Pawel Zawadzki et al.   Cell Reports

In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair

(2014) Mathew Stracy et al.   FEBS LETTERS

Single-molecule tracking in liveVibrio choleraereveals that ToxR recruits the membrane-bound virulence regulator TcpP to thetoxTpromoter

(2014) Beth L. Haas et al.   MOLECULAR MICROBIOLOGY

Tracking single molecules at work in living cells

(2014) Akihiro Kusumi et al.   Nature Chemical Biology

Objective comparison of particle tracking methods

(2014) Nicolas Chenouard et al.   NATURE METHODS

Structure and DNA-Binding Traits of the Transition State Regulator AbrB

(2014) Andrew L. Olson et al.   STRUCTURE

Motion of variable-length MreB filaments at the bacterial cell membrane influences cell morphology

(2013) Christian Reimold et al.   MOLECULAR BIOLOGY OF THE CELL

Extracting intracellular diffusive states and transition rates from single-molecule tracking data

(2013) Fredrik Persson et al.   NATURE METHODS

Single-molecule DNA repair in live bacteria

(2013) S. Uphoff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Bacterial SMC Complex Displays Two Distinct Modes of Interaction with the Chromosome

(2013) Luise A.K. Kleine Borgmann et al.   Cell Reports

High-throughput, subpixel precision analysis of bacterial morphogenesis and intracellular spatio-temporal dynamics

(2011) Oleksii Sliusarenko et al.   MOLECULAR MICROBIOLOGY

Single-molecule investigations of the stringent response machinery in living bacterial cells

(2011) B. P. English et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromosome Organization by a Nucleoid-Associated Protein in Live Bacteria

(2011) W. Wang et al.   SCIENCE

Single molecule tracking fluorescence microscopy in mitochondria reveals highly dynamic but confined movement of Tom40

(2011) Anton Kuzmenko et al.   Scientific Reports

Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation

(2010) Onuma Chumsakul et al.   NUCLEIC ACIDS RESEARCH

Mean square displacement analysis of single-particle trajectories with localization error: Brownian motion in an isotropic medium

(2010) Xavier Michalet   PHYSICAL REVIEW E

A cyanobacterial AbrB-like protein affects the apparent photosynthetic affinity for CO2by modulating low-CO2-induced gene expression

(2008) Judy Lieman-Hurwitz et al.   ENVIRONMENTAL MICROBIOLOGY

Robust single-particle tracking in live-cell time-lapse sequences

(2008) Khuloud Jaqaman et al.   NATURE METHODS