Comprehensive Absolute Quantification of the Cytosolic Proteome ofBacillus subtilisby Data Independent, Parallel Fragmentation in Liquid Chromatography/Mass Spectrometry (LC/MSE)

Essential genes in Bacillus subtilis: a re-evaluation after ten years

(2013) Fabian M. Commichau et al.   Molecular BioSystems

13C-flux Analysis Reveals NADPH-balancing Transhydrogenation Cycles in Stationary Phase of Nitrogen-starvingBacillus subtilis

(2012) Martin Rühl et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

(2012) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

(2012) P. Nicolas et al.   SCIENCE

Efficient, Global-Scale Quantification of Absolute Protein Amounts by Integration of Targeted Mass Spectrometry and Two-Dimensional Gel-Based Proteomics

(2011) Sandra Maass et al.   ANALYTICAL CHEMISTRY

Cell design in bacteria as a convex optimization problem

(2011) Anne Goelzer et al.   AUTOMATICA

Bacterial growth rate reflects a bottleneck in resource allocation

(2011) A. Goelzer et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Cellular Stoichiometry of the Chemotaxis Proteins in Bacillus subtilis

(2011) V. J. Cannistraro et al.   JOURNAL OF BACTERIOLOGY

Indirect Repression by Bacillus subtilis CodY via Displacement of the Activator of the Proline Utilization Operon

(2011) Boris R. Belitsky   JOURNAL OF MOLECULAR BIOLOGY

Optimal regulatory strategies for metabolic pathways in Escherichia coli depending on protein costs

(2011) F. Wessely et al.   Molecular Systems Biology

SubtiWiki--a comprehensive community resource for the model organism Bacillus subtilis

(2011) U. Mader et al.   NUCLEIC ACIDS RESEARCH

Improving Protein and Proteome Coverage through Data-Independent Multiplexed Peptide Fragmentation

(2010) Kevin Blackburn et al.   JOURNAL OF PROTEOME RESEARCH

Cost of Unneeded Proteins in E. coli Is Reduced after Several Generations in Exponential Growth

(2010) Irit Shachrai et al.   MOLECULAR CELL

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

Interdependence of Cell Growth and Gene Expression: Origins and Consequences

(2010) M. Scott et al.   SCIENCE

Towards a proteome signature for invasive ductal breast carcinoma derived from label-free nanoscale LC-MS protein expression profiling of tumorous and glandular tissue

(2009) Claudia Röwer et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

The Bacillus subtilis ywjI (glpX) Gene Encodes a Class II Fructose-1,6-Bisphosphatase, Functionally Equivalent to the Class III Fbp Enzyme

(2009) M. Jules et al.   JOURNAL OF BACTERIOLOGY

A Comprehensive Proteomics and Transcriptomics Analysis of Bacillus subtilis Salt Stress Adaptation

(2009) H. Hahne et al.   JOURNAL OF BACTERIOLOGY

From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later

(2009) V. Barbe et al.   MICROBIOLOGY-SGM

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

(2009) Johan Malmström et al.   NATURE

A Proteomic View of an Important Human Pathogen – Towards the Quantification of the Entire Staphylococcus aureus Proteome

(2009) Dörte Becher et al.   PLoS One

Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures

(2009) Guo-Zhong Li et al.   PROTEOMICS

The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS

(2009) Scott J. Geromanos et al.   PROTEOMICS

LocateP: Genome-scale subcellular-location predictor for bacterial proteins

(2008) Miaomiao Zhou et al.   BMC BIOINFORMATICS

The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results

(2008) John C Braisted et al.   BMC BIOINFORMATICS

Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis

(2008) Anne Goelzer et al.   BMC Systems Biology

Precursor-Ion Mass Re-Estimation Improves Peptide Identification on Hybrid Instruments

(2008) Roland Luethy et al.   JOURNAL OF PROTEOME RESEARCH

Absolute Protein Quantification by LC/MSEfor Global Analysis of Salicylic Acid-Induced Plant Protein Secretion Responses

(2008) Fang-yi Cheng et al.   JOURNAL OF PROTEOME RESEARCH